UFO10509.5prime Sequence
1083 bp (1063 high quality bases) assembled on 2012-01-06
> UFO10509.5prime
CAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTTTGTGGCAG
GTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAGCAGACGGT
GCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCTGCTTCAAT
CCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGAGCAACTAT
AACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGTCCAATGGG
TGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTCTATCAACA
CCTACAATGCTGGCTTATATCAAACCAATGTAGCAACACTGTCGACACCA
CAACAACATGTTTCCCATCAACACCACCACCACCTCCGCCAACAACAACA
ACAACAACATCAACAACAAGCACCACAACAACAACCACATCCACAACACC
TTCACCACCAACAACAACTAGTTGCCCCAGCTCAATCGCACAATCTTTAT
CAATTTAAAGAACCACCGCTATTGGGACCCGGAGCCGCTTTCCCACCATT
CGGAGCTCCCGAATATCACACCACCACACCGGAGAACTGGAAGGGGGCCG
CCATCCATCCCACTGGCCTGATGAAGGAGCCCGCTGGTGTTGTGCCCGGA
CGCAATGCTCCGGTGGCCTTCACACCGCAAGGACAGGCTCAGGGCGCCGT
CATGATGGTCTACGGCCTGGACCACGACACTTCCAACACGGATAAGCTCT
TCAATTTGGTTTGCCTGTACGGCAACGTGGCACGGATCAAGTTCTTGAAG
ACCAAAGAGGGCACCGCCATGGTGCAAATGGGAGACGCTGTGGCCGTTGA
GCGTTGCGTGCAGCACTTGAACAACATTCCCGTGGGCACTGGTGGCAGAT
ACAGATCGCTTTCTCAAACAGAACTTCCTATCCGAGGTGATCAACCCGTC
TTTGCTGCCGATCATTCGCCCAGCTCAAGAGTACACCGGCTCCAGACATC
GTTTCCTATCGCCGCCCAGGCGAGCAGATCGCATTCAACCACCGAGCAAG
ATTTTGCCTTTTCACCACCCGCCCGGGCTTGAA
UFO10509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RJ | 2379 | CG9218-RJ | 301..1388 | 8..1082 | 5025 | 98.3 | Plus |
| sm-RT | 3226 | CG9218-RT | 1498..2263 | 330..1082 | 3415 | 97.7 | Plus |
| sm-RK | 3175 | CG9218-RK | 1447..2212 | 330..1082 | 3415 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19538029..19538392 | 693..330 | 1820 | 100 | Minus |
| 2R | 25286936 | 2R | 19546449..19546771 | 330..8 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 19532436..19532712 | 1050..785 | 855 | 93.1 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 785..689 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:43 has no hits.
UFO10509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:58 Download gff for
UFO10509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RJ | 278..1371 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:43 Download gff for
UFO10509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RJ | 295..1388 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:09 Download gff for
UFO10509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RJ | 295..1388 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:09 Download gff for
UFO10509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19532436..19532711 | 786..1050 | 95 | <- | Minus |
| 2R | 19537776..19537868 | 693..785 | 100 | <- | Minus |
| 2R | 19538030..19538391 | 331..692 | 100 | <- | Minus |
| 2R | 19546449..19546774 | 1..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:43 Download gff for
UFO10509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15419941..15420216 | 786..1050 | 95 | <- | Minus |
| arm_2R | 15425281..15425373 | 693..785 | 100 | <- | Minus |
| arm_2R | 15425535..15425896 | 331..692 | 100 | <- | Minus |
| arm_2R | 15433954..15434279 | 1..330 | 98 | | Minus |
