UFO10512.5prime Sequence
1031 bp (900 high quality bases) assembled on 2012-01-06
> UFO10512.5prime
CAGTCGACATGTTGTTGATGGAGCTCGTGATTTTCTTTGACTGGCTGTTG
ATCGTCTCTGGTATGCCGAAGGTGAAGTTTGGCCTCCAAAATTTTACGGG
TCGTGGTAAAGATTACCGCATCAAAGTGATTACTGGGATTCTTATAATAG
ACAAGTACGGCTACTCAGTGGAGACGCACACGGTTCGCACTGGAGATGGA
TACATTCTGGATATGTTTCGGATTCCCTCATCACCCAACTGCAAGGAGGA
CGGTTTCAAGCCGTCTGTTCTTATCCAGCACGGACTGATCAGCCTGGCCG
ATTCCTTCCTGGTGACGGGACCGAGGAGCGGACTTCCATTCATGCTGGCC
GATCGCTGCTACGACGTGTGGCTGAGCAACAGCCGGGGAGTCCGCTACTC
GCAGCGCCACATCCGGCTTTTTGTCTTCCCAGGATGCCTTCTGGCGCTTT
AGCTGGCACGAAATGGGAATGGAGGACCTGCCCGCCATGATCGACTACAT
CCTGTCCACGACAAACGAGGAAGCGTTGCACTTCGTTTGCCATTCTCAGG
GATGCACCACCCTACTGGTTTTGCTCAGCATGAAGCCGGAATAATAACCG
GATGATAAAGACGGCCAACATGATGGCCCCCGCCGTTTTCATGAAGCACG
CAAGGAACAAGCTAATGAAAATGTGTTGGGAACATCATTATGAGCATGAA
GGACAGTAGTTTTTTTTGGCCCCTTAAAAGCTATAAGATTCCTGCTATCC
CGTTTTTTTGCAAATGCTCGAAGTTTAAAAAATTGTGCGCCTTTTATGTT
CATAATGGCCCAGTGAAGAACCAACATCGTATATGAACAATACCGCCATA
CATTGATATAGCACGCATCCTGTGCGATTCACTCGACAGCCAAGCACTTT
CTTCACTCCGGAATCTGGAAATCCGTCCGTATGACTCGGAGTCATGAAAA
TAAAAACTATACATCAGACCCGCCTCCGATTATCCGTGGAAACGTCCGCC
TCAGTCGCCATTATATAAACACAGCATGTGA
UFO10512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11600-RB | 1330 | CG11600-RB | 14..1045 | 9..1025 | 4295 | 96.1 | Plus |
| CG11598-RB | 1248 | CG11598-RB | 361..507 | 436..582 | 270 | 78.9 | Plus |
| CG18530-RA | 1188 | CG18530-RA | 363..507 | 438..582 | 230 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12636735..12637431 | 137..841 | 3025 | 97.6 | Plus |
| 3R | 32079331 | 3R | 12636553..12636681 | 9..137 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 12635332..12635478 | 436..582 | 270 | 78.9 | Plus |
| 3R | 32079331 | 3R | 12633781..12633925 | 438..582 | 230 | 77.2 | Plus |
| 3R | 32079331 | 3R | 12639039..12639187 | 442..590 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:28:36 has no hits.
UFO10512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:53 Download gff for
UFO10512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 1..1032 | 9..1025 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:16 Download gff for
UFO10512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 5..1045 | 1..1025 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:44 Download gff for
UFO10512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 5..1045 | 1..1025 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:44 Download gff for
UFO10512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12636544..12636681 | 1..137 | 97 | -> | Plus |
| 3R | 12636736..12637431 | 138..841 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:16 Download gff for
UFO10512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8462266..8462403 | 1..137 | 97 | -> | Plus |
| arm_3R | 8462458..8463153 | 138..841 | 97 | -> | Plus |
