UFO10513.5prime Sequence
1131 bp (1022 high quality bases) assembled on 2012-01-06
> UFO10513.5prime
CAGTCGACATGAAGCTACTGCTGTTGGCGGTGATTGTTGCCCTCGCTTGG
CTTCTTATAGAGGCTGGCAAGACCAGGACTAAGAACAGCTCCTGTCTGGT
GAAAAACAAATATCCCCCCGAATCTTCTTGTAGATCATCGCATCGGGAAT
TCTTTGCCTTTCACCGAGTTCTATTCGACTGCATAAAGGTGACCACAAAT
TGCCGCAAGATCTACAGGAGGAATGAGTTCCATAGTTTGCAATCGTGCAG
AGATGCATGTCACTACCACATGGCTGAACCAAGTCCGCCACCACCCCAAA
ATGGTACGACTTCTGCACCTGGAGGTGCCTCCGGAGCGCCAGGAGACGCT
CCAGCAGCTGAAACGCCAGCTGCAGCGGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCCTTTAGGGAAATAGGCCAGGTTTTCACGTACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCA
CTCAGAGCGATGAAAACGTTTCATTTGCTCATGGAAACGGGGTAACAGGG
TGACACTATCCATATCACCAGCTCACGTCTTTCATTGCCATACGAATCGG
ATGACATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGAAAAAACTGT
GGCTTAATTTTCCTTTACGGATCTATAGAAA
UFO10513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43057-RB | 577 | CG43057-RB | 15..384 | 8..377 | 1850 | 100 | Plus |
| CG43057-RA | 468 | CG43057-RA | 15..384 | 8..377 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8243516..8243707 | 377..186 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 8243757..8243868 | 190..79 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 8243913..8243989 | 84..8 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:16 has no hits.
UFO10513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:01 Download gff for
UFO10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43057-RA | 1..372 | 9..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:00 Download gff for
UFO10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43057-RA | 8..391 | 1..385 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:22 Download gff for
UFO10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43057-RA | 8..391 | 1..385 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:22 Download gff for
UFO10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8243516..8243704 | 189..377 | 100 | <- | Minus |
| 2L | 8243759..8243868 | 79..188 | 100 | <- | Minus |
| 2L | 8243919..8243992 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:00 Download gff for
UFO10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8243516..8243704 | 189..377 | 100 | <- | Minus |
| arm_2L | 8243759..8243868 | 79..188 | 100 | <- | Minus |
| arm_2L | 8243919..8243992 | 1..78 | 94 | | Minus |
