UFO10515.5prime Sequence
1141 bp (1018 high quality bases) assembled on 2012-01-06
> UFO10515.5prime
CAGTCGACATGAAAAGATGCAGCCGTATAAATCGCACTGGAATTGAGCGA
TCGCAGTTATTGACTCGTCTCAATTGTCGCAGCGATGAAGTGGTTTTCGA
TTTTGTTTGCGCTACTGGCGCTCATTTTCTTCGTCGAATTTGGATATGCT
CGAACAATTCCCAGGATTACCATTCGCAATGGCGACATTATAGTTCATGG
CAATTGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAC
GTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA
TATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCAT
TCATCACGCGGACAGATTGTGAATAAAGGGCGGATAAACTTGTGCTTATT
TTTCTTACGGCTTCAAAAGGCGTATTATCCACTGACGTCTGGTTATAGTA
CATTGAGCACTGACTGAAATGCCTCAATGTTCTTTACGATGCCATGGGAT
AACCACGGTGTAATCAGTGATTTTTCCCCCATTTAGCTCCCTAACCCTGA
AGATCATACCTTGCTATGGCCTACATTAACGAGTTAGTACC
UFO10515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43202-RA | 390 | CG43202-RA | 1..206 | 4..209 | 1015 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18381696..18381845 | 152..3 | 735 | 99.3 | Minus |
| 2R | 25286936 | 2R | 18381577..18381634 | 209..152 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:24 has no hits.
UFO10515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:02 Download gff for
UFO10515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42737-RA | 1..209 | 4..212 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:03 Download gff for
UFO10515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43202-RA | 1..211 | 4..216 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:26 Download gff for
UFO10515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43202-RA | 1..211 | 4..216 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:26 Download gff for
UFO10515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18381577..18381634 | 152..209 | 100 | <- | Minus |
| 2R | 18381697..18381846 | 1..151 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:03 Download gff for
UFO10515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14269202..14269351 | 1..151 | 98 | | Minus |
| arm_2R | 14269082..14269139 | 152..209 | 100 | <- | Minus |
