UFO10516.5prime Sequence
1154 bp (1060 high quality bases) assembled on 2012-01-06
> UFO10516.5prime
CAGTCGACATGGAATCCCCGGACAACAGGCTGTACATGTGCACCGCGTGC
TTTAAAAGGTTTCTTTGGAGCGAACTGTCGAGGAAGGAGCTCCGCTGCGC
TCAGTGCCGTCTGTCAACCAAAATCTGTGTCATTTGCGATAAGAAGTTTG
AGCCGCGCGAAATGTCGCAAGTTTACTGCAAGCAATGCAATTTCTACATC
GAGAGACATGCCGTAGTCAAGCCCCCTCCCTTGGGTGTACAAATCGGAAA
ACCAGCGGAGATGACCAGTGGGCCAGGTACGGAAGGATCTTCGATCACAG
AGCGCTGGAAGGAGATTAAGGCCGCCGCTGGAATCGTGGATGACTTTGAT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGC
CAGGTTTCACCGTAACACGCCACATCTTGCGATATATGTGTAGAAACTGC
CGGAATCGTCGTGTATTCACTCAGAGCGATGAAAACGTTTCAGTTTGCTC
ATGGAAAACGGTGTAACAAGGTGACCACTATCCCATATCACAGCTCACGT
CTTTCATTGCATACGAAATTCCGGATGACATTCATCAGGCGGCAGAATGT
GAATAAGGCCGATAAACTTGTGCTTATTTTCTTACGGTCTTTTAAAGGCG
TATATCCAGCTGAACGGTCTGTTATAGGTAATTTGACAACGTGACTGAAT
GGGA
UFO10516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34029-RA | 460 | CG34029-RA | 52..396 | 6..350 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21970831..21971175 | 350..6 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:31 has no hits.
UFO10516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:03 Download gff for
UFO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34029-RA | 9..362 | 1..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:06 Download gff for
UFO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34029-RA | 42..395 | 1..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:29 Download gff for
UFO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34029-RA | 47..400 | 1..354 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:29 Download gff for
UFO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21970831..21971178 | 1..350 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:06 Download gff for
UFO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17858336..17858683 | 1..350 | 99 | | Minus |
