UFO10519.5prime Sequence
1120 bp (1062 high quality bases) assembled on 2012-01-06
> UFO10519.5prime
CAGTCGACATGTGCTTTTGTCCGACACTTGGTCTCAAAATTGTACTTTTG
TTAGTAATACCTATAACCGCAGGAATTAATGGTGCTCAAATAGCCAAAGA
TGTTTCTATATTGAATTTATTAAAGGGATACCATTATATTATGCTTATTA
TAAGCCTATCCCTGTCCGTAGTTATACTGGCGACTCTGGTTCTTTTAATA
TATGCGGCGATCTGTAATAAAATTCGAATTCTGAAAGTGATGATCTTTGT
TTATGTAGCCATCGTCGTGGTGAAACTGATAATTCTGTTCGTGTGTCTAA
GTACTGAATTGAATCCTGACAAGACGACAGCCCATCCCATATTTATGATA
TGCTGGCTCCTTACGTTCTTATGTATGGCCGTTATAATAATATACTGGCT
TCGGCTACATGACCTTGCCAACGAAGACAATGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGCCACGTTT
AAATCAAAACTGGTGAAACTCACCCAGGGATGGCTGAGACGAAAACATAT
TCTCAATAACCCTTTAAGGGAATAGCCAGGTTTTCACCGTAACACGCCAC
ATCTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTTTTCACCCC
AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTACAAGGTGA
CACTATCCCATATCACCAGCTCACGTCTTTCATGCCATACGAAATCCGAT
GACATTCTCAGGCGCAGAAT
UFO10519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42661-RB | 2597 | CG42661-RB | 536..958 | 9..431 | 2115 | 100 | Plus |
| CG42661-RA | 2531 | CG42661-RA | 536..958 | 9..431 | 2115 | 100 | Plus |
| CG42660-RB | 2597 | CG42660-RB | 536..958 | 9..431 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7466401..7466568 | 72..239 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 7466625..7466751 | 239..365 | 635 | 100 | Plus |
| 3L | 28110227 | 3L | 7466818..7466884 | 365..431 | 335 | 100 | Plus |
| 3L | 28110227 | 3L | 7466286..7466349 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:30:56 has no hits.
UFO10519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:05 Download gff for
UFO10519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66A-RD | 532..958 | 1..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:19 Download gff for
UFO10519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42660-RA | 532..958 | 1..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:38 Download gff for
UFO10519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42660-RB | 532..958 | 1..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:38 Download gff for
UFO10519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7466282..7466348 | 1..71 | 94 | -> | Plus |
| 3L | 7466401..7466568 | 72..239 | 100 | -> | Plus |
| 3L | 7466626..7466751 | 240..365 | 100 | -> | Plus |
| 3L | 7466819..7466884 | 366..431 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:19 Download gff for
UFO10519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7459382..7459448 | 1..71 | 94 | -> | Plus |
| arm_3L | 7459501..7459668 | 72..239 | 100 | -> | Plus |
| arm_3L | 7459726..7459851 | 240..365 | 100 | -> | Plus |
| arm_3L | 7459919..7459984 | 366..431 | 100 | == | Plus |
