UFO10522.5prime Sequence
1049 bp (988 high quality bases) assembled on 2012-01-06
> UFO10522.5prime
CAGTCGACATGCGGATCAATCTCATCTACTTCACGCTGCTTTGGGCATTC
TTCTTCTCAACCGAAGTATTTGGAAAGGTTAAAATACGAGAGTCCGATAT
ACGACGTATAACAAAGATGGGAAGCTACAAGGTACGCCAAGAAAAATGTT
TGTTCATACCCAGCTATGGACGCTGCAAAAAACATATCGCAGTATATGGC
TACAACATTATAACCAATCGATGCTCAGAATTTACCTACAGTGGCTGCGG
GGGGAATCCCAATCGTTTTATGACTGATAGCCAATGTCGAAACACTTGCT
ATGTGGTTCCAGCGAGGAAAACCGTCTCAGAACCGGACTATTATGCCGAT
GACGGTGTCACAGAACCGATGCAAGTGGATGAAGAGGACGATTACGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATGGCTGAGAC
GAAAAACTTATTCTCATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGATATATGTGTAGAACTGCCGAATCGTCTGTA
TCACTCCAGAGCGATGAAACGTTTCAGTTTGTCATGGAAAGTGTACAGGT
GACACTATCCATATCACGCCTACGTCTTCATGCCATAGAATCCGATGAC
UFO10522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31515-RB | 469 | CG31515-RB | 27..414 | 8..395 | 1940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23388428..23388683 | 395..140 | 1280 | 100 | Minus |
| 3R | 32079331 | 3R | 23388739..23388872 | 141..8 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:51 has no hits.
UFO10522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:59 Download gff for
UFO10522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31515-RB | 22..420 | 1..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:48 Download gff for
UFO10522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31515-RB | 22..420 | 1..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:11 Download gff for
UFO10522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31515-RB | 22..420 | 1..404 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:11 Download gff for
UFO10522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23388739..23388875 | 1..141 | 97 | | Minus |
| 3R | 23388428..23388681 | 142..395 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:48 Download gff for
UFO10522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19214150..19214403 | 142..395 | 100 | <- | Minus |
| arm_3R | 19214461..19214597 | 1..141 | 97 | | Minus |
