UFO10526.5prime Sequence
1145 bp (1029 high quality bases) assembled on 2012-01-06
> UFO10526.5prime
CAGTCGACATGGTCATCATGATATTTGTGCTGCTACTCTTATTAGGAGTG
ACCAGTTCCTGGGCCACAGACTATGAATTATTGCTCGAGGATCCGGACAT
ATTTTCGACGTGCACTGATGGTCCTCCCGGATCCATCAACATCCGCCAGG
CACTCAACTTAGACGACATTGTAATCGACCAGAAAGGGGATATACTTCAT
GTATCCGGGAACGCCACCGTCGTGTGGGATGTGCAGCCCACCGATCGGAT
TACTGCGAGACTTGATGTTTTTCACTTCAACCGCGGCACTTGGGAGCCCA
CTGTCTTTAGCATGGCCACCCAGAACTTTTGCTCCATCATGTACGACAAG
AACCAGTATTGGTATAAGTATTGGACAAGGTTTATAACCAATCGCCATGA
GGTGGAAAAGAAGTGCTTCAGAGGGCCTGATACCGTTCTGGTACACGAGC
CCTTCGATCTCATACTAAAATTTGAGAATTTTCGTGGACCTCTTCTTAGA
GGACGTCATAAACTTGTCATATTGTTTAACGCACTAGATGAGAGGAATAT
ACCGCGCCCAAACCCAATTTGTTTGGAGATCATAGGAGAACCACTAAAGT
TGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCACC
ACCTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGCGAAAAG
TGTCCATATTGGGCACGTTTAATCAAACTGTGAACTCACCAGGATGGGCT
GAAACGAAAACATATTCCCAATACCCTTAAGGAATAGGCCAGGTTTCACG
TAACCGCCCCACTCTGGCGAATATTGTGTTAAGAAACTGCCGGAA
UFO10526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB42b-RA | 674 | CG33351-RA | 1..597 | 9..605 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6943749..6943995 | 255..9 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 6943507..6943683 | 431..255 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 6943173..6943346 | 605..432 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:27 has no hits.
UFO10526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:07 Download gff for
UFO10526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42b-RA | 1..591 | 18..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:35 Download gff for
UFO10526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42b-RA | 1..602 | 9..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:50 Download gff for
UFO10526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42b-RA | 1..602 | 9..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:50 Download gff for
UFO10526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6943168..6943346 | 432..613 | 97 | <- | Minus |
| 2R | 6943507..6943683 | 255..431 | 100 | <- | Minus |
| 2R | 6943750..6943998 | 4..254 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:35 Download gff for
UFO10526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2830673..2830851 | 432..613 | 97 | <- | Minus |
| arm_2R | 2831012..2831188 | 255..431 | 100 | <- | Minus |
| arm_2R | 2831255..2831503 | 4..254 | 98 | | Minus |
