UFO10527.5prime Sequence
966 bp (966 high quality bases) assembled on 2012-01-06
> UFO10527.5prime
CAGTCGACATGATCGAGACACTGTATAACCTGCCCTTCCACATCCTGGTG
CCGCCGAACATCAAGGTGCGCAGATTCAGCATTCCAATGCCGTCACCGAT
GGCCGTTTTCAGTGTGATTTTGTTTTCCTATTTTCTGGTGACAGGCGGTA
TCATATATGACGTGATTGTGGAGCCGCCCAGTCTGGGAGCCACGGTGGAT
GAGCACGGACACTCGCGTCCAGTGGCCTTTATGCCCTACCGTGTGAATGG
GCAGTACATCATGGAGGGCCTGGCCAGCAGCTTCCTGTTCACCGTCGGCG
GACTGGGATTCATTATCATGGACCAAACGCACACGCCGGGCAAGACGAAC
CTCAACCGCCTGCTGCTGACCGCCATGGGATTCATTTTCATCCTGGTCTC
CTTCTTCACCACCTGGCTGTTCATGCGCATGAAGCTGCCCAGCTACCTGC
AGCCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAATCAAAACTGGTGAAATCACCAGG
GATTGGCTGAGACGAAAAACTATTCTCATAACCTTTAGGAAATAGGCAGG
TTTCACCCGTAACACG
UFO10527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9662-RB | 846 | CG9662-RB | 118..565 | 8..455 | 2240 | 100 | Plus |
| CG9662-RA | 795 | CG9662-RA | 118..565 | 8..455 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3376113..3376421 | 455..147 | 1545 | 100 | Minus |
| 2L | 23513712 | 2L | 3376479..3376620 | 149..8 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:36 has no hits.
UFO10527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:08 Download gff for
UFO10527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9662-RA | 59..514 | 1..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:39 Download gff for
UFO10527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9662-RA | 110..565 | 1..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:53 Download gff for
UFO10527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9662-RA | 110..565 | 1..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:53 Download gff for
UFO10527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3376481..3376623 | 1..147 | 97 | | Minus |
| 2L | 3376113..3376420 | 148..455 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:39 Download gff for
UFO10527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3376113..3376420 | 148..455 | 100 | <- | Minus |
| arm_2L | 3376481..3376623 | 1..147 | 97 | | Minus |
