UFO10531.5prime Sequence
1130 bp (1045 high quality bases) assembled on 2012-01-06
> UFO10531.5prime
CAGTCGACATGGAAAGATTTGGTATTCCACGTGGTAAGCGTCCCCGAGTC
CAAGTTTCATTGGACGACAAGGAGCGAGCCATAGCCCGAATCCGAGGTGG
TGAAACCAAGGCCGGAATATCACGCGAATTGGGTGTTCCGGAGTCTACGG
TTCGCGGTTGGGTGAAACGAGCTGAGCAGCGGTTGGCCCGAGAGACAACT
AGCCAAACGGGTTCTGCCAACTATTCCACAATCCTGGCCATGACCCTAGC
GAAACCGCAAGTTACCATCAGCACAAAATCGTCGGCTTCGTCTGTCATTT
CTAAATCATCATACTCATCGCCACCGCTGGATTTGAAACCCCTGAAACAG
CCCCAGAAACGAAACATTAATGGTCATCCGGTAACGTGCACCCAGGATCC
AGTCGAGGATTCAGCAGCTACATCCATCCCCATCCCCGTTCCGATTCCGG
TGCCCCTTCCTGTGCCGCCAATGGTTTCGCCTGACAGTGAGCAACAGATG
AGCGCTTGGTTGCATATATTCAATGCGGGAATTCTGAACTTCACTCTGAT
TGCCTCCGCTGCAGTGCTTCAGGCTCGCTCGCGTGGTTTGGCGGATCGCC
TGCCGTTGTGGCAAATTATCACGGATTTTGTTGATGAAGCCGAACGTAAT
GTGAATGCCAACGGGGGTTGGTACCTCGAGGGACAGCCGGCGACAGGACA
CATGAGTGCCAGGCAACGGCCAGTCCGAGTGCCCACGAACGTGCATTCAT
ATCGCAGAACTTGAAAGCACCACCGGCTCATATTACCGCCGAAGATGACG
AAGACTCCTACACGGACGCTGATGTGCCACACGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATATCACCACTAGCCTGGAGATCCTGGTCATGACTGGTGCTTGGA
TCTCACCATAAAAACGCCCGGCGGCAACGAGCGTTCTGAACAATCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAAGGAGTCCAGCGAGCTCGATA
TCATTACGCCCCGGCCTGCCACTCATCGCATACTGTTGGAATTCATTAAG
CATTCTGCCGAACTTGGAAGCCTCCACAAC
UFO10531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-RC | 1188 | CG30401-RC | 225..1049 | 9..832 | 4070 | 99.6 | Plus |
| CG30401-RA | 1258 | CG30401-RA | 295..1119 | 9..832 | 4070 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21985765..21986395 | 832..203 | 3060 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21986441..21986644 | 212..9 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:55 has no hits.
UFO10531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:09 Download gff for
UFO10531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 1..828 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:45 Download gff for
UFO10531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 173..1003 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:59 Download gff for
UFO10531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 295..1125 | 9..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:59 Download gff for
UFO10531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21985759..21986387 | 211..839 | 98 | <- | Minus |
| 2R | 21986443..21986644 | 9..210 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:45 Download gff for
UFO10531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17873264..17873892 | 211..839 | 98 | <- | Minus |
| arm_2R | 17873948..17874149 | 9..210 | 100 | | Minus |
