UFO10532.5prime Sequence
1134 bp (1030 high quality bases) assembled on 2012-01-06
> UFO10532.5prime
CAGTCGACATGAATATCTTTATCTCCTTAATATTGGTAGTGCTGGCCATT
TTATCTTTTGCTGACCACACCGTGGCAGACGGAGATCGGCACCTAAATGA
GGACTTAAATCGAGCGACGGTAAAGAAGACTAAGTATGGTTGGCAATGTG
CCGGGGTGACGTGCCCCATAAAGTTTACGGCATCTTGTAAGGTAACAAAG
GTCCTAAAGCCCTCTGATCTACAGCACACTGAGCTCCTGATTTTGTGCAT
GGATAAAAACGATAAGCCTATGTGTGGGATAACACGAACTCGAAAAGGGG
TAATACAGGAAGTTCTGGACGTGGATGAAAACGGAAATACGATATATGAC
AAAAAGGAAGTTATTTCGGAGAACGATGGTACTAAAATCCCTAGGTGCCC
ACGAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTAAAATATTTGCCCATGGTGAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAA
TAGGCCAGGTTTTCACCGTAACACGCCACATCTGCGATATATGTGTAGAA
ACTGCCGGAAATCGTCGTGTATTCACTCAGAGCGATGAAACGTTTCAGTT
GCTCATGGAAACGGTGTAACAGGGTGACCACTATCCATATCACCAGCCTA
CCGTCTTTCATTGCCATACGAATTTCCGGATGAACATTCATCAGGGCGCA
AGAATGGTGATAAAAGGCGAGATAAAACTGTGTC
UFO10532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-RA | 778 | CG42607-RA | 147..545 | 9..407 | 1995 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 239..572 | 74..407 | 1670 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 123..189 | 9..75 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21683331..21683602 | 407..136 | 1360 | 100 | Minus |
| 3L | 28110227 | 3L | 21683776..21683842 | 75..9 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 21683665..21683726 | 135..74 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:32:03 has no hits.
UFO10532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:10 Download gff for
UFO10532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 139..548 | 3..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:50 Download gff for
UFO10532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 139..548 | 3..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:02 Download gff for
UFO10532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 139..548 | 3..411 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:02 Download gff for
UFO10532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21683331..21683602 | 136..407 | 100 | <- | Minus |
| 3L | 21683665..21683725 | 75..135 | 100 | <- | Minus |
| 3L | 21683777..21683850 | 3..74 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:50 Download gff for
UFO10532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21676431..21676702 | 136..407 | 100 | <- | Minus |
| arm_3L | 21676765..21676825 | 75..135 | 100 | <- | Minus |
| arm_3L | 21676877..21676950 | 3..74 | 95 | | Minus |
