UFO10533.5prime Sequence
1110 bp (1026 high quality bases) assembled on 2012-01-06
> UFO10533.5prime
CAGTCGACATGAAGTTACTCTGGCTGCTGTTAGTGGGCGTTGTTGCCGGG
CAACCTTGTGATAAGCTCTGTCCCATCAATAATAACTTCGGATGTGTCAG
CAAGGACAATAAATGCTTTTACACCGTTCGCAATCCATGTATTTTGAAGG
CCATTAACTGCTATCGTAAATCGAAGAACTTATCTGTTTTGAAGCCCATT
TTGCGCAGCAAGTGCACCAATAAGGAAGTTCCAGTTTGCGAGAATATCAA
TAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAA
TAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAG
AAACTGCCGGAAATCGTCGTGGTATCACTCCAGAGCGATGAAAACGTTTC
ATTTGCCTCATGGAAAACGGTGTAACAGGGTGACACTATCCCATATCACC
AGCTCACGTCTTCATTGCCATACGAAATCCCGGATGAGCATTCATCAGCG
GGCAGAATGTGAATAAAGCCGGATAACTTGTGCTAATTTTTCTTACGGTC
TTTAAAAGCCGTAATATCCAGCTGAACGTCCGGTAAAGTACATTGAGCAC
TGAACTGAAATGCCTCCAATTGTCTTTCCAAGGCTTTGGAATATTCAACG
GTGGTTTATC
UFO10533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43056-RA | 303 | CG43056-RA | 33..278 | 9..254 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4437905..4438055 | 36..186 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 4438108..4438176 | 186..254 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:32:10 has no hits.
UFO10533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:11 Download gff for
UFO10533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43056-RA | 33..283 | 9..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:55 Download gff for
UFO10533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43056-RA | 33..283 | 9..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:06 Download gff for
UFO10533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43056-RA | 33..283 | 9..262 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:06 Download gff for
UFO10533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4437906..4438055 | 37..186 | 100 | -> | Plus |
| 2L | 4438109..4438176 | 187..254 | 100 | == | Plus |
| 2L | 4437819..4437846 | 9..36 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:55 Download gff for
UFO10533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4437819..4437846 | 9..36 | 100 | -> | Plus |
| arm_2L | 4437906..4438055 | 37..186 | 100 | -> | Plus |
| arm_2L | 4438109..4438176 | 187..254 | 100 | == | Plus |
