UFO10534.5prime Sequence
1080 bp (1054 high quality bases) assembled on 2012-01-06
> UFO10534.5prime
CAGTCGACATGAGTGGTATGCAAACCACAACTGTGGACCCAGTACCCAGC
CCCCCACAGGAAACCATCATCATCGCCACCGCGCCACCACCTGAGCCCAG
AAAACCGGCTGTGACCACTAATAACCGAGGATACTTTACCCGCATCAATA
AACAGAATTATGCGTCCTATACAGTTTTCTTCCTATTCATCTATGGTGGC
ATGGACATGGCAGCCAGCTTGGGCTGGAGTCAACCCTACAGCGTCCTCCT
ATTCACGGAGTACTCGTACTGTTGGTTTGTAGGTGTCATCATTGGAGCGC
TGGCCACCACTCTCACCATGTCTTTTCTGCCCAAGCTGGTCTACTATGTT
TTTGGTGCTCTTATGCAACTAACTGGATCCATTATATTTACGGCTGCAGA
CTATTCCGCCTGCCTGGCGGCCCGCTATTTGGCCGGGTTAGGGATTGGCC
TCATTACGGTGCCATTCCTCATTCACAATGCTGAGGTGGCATCTAACAAC
TTACGAGGAGTCAACGGCGGAATGGAGCAGTGCGGTCTAGCCCTCGGAAT
TTTCTTTCAAGTGATTTTTACTACGGAGTGGACTTCATTAATTGACTCAA
ACCCAAACGAGATCCATGGCATCATAGGGATCGTCGTCTCATTGTTTGGT
TTGGCGATGACTGCCCTGGTGGTAGAGTCGCCAATCTTCTTTCTACGTCG
AAATATGGAGAACAGGGCGCAGCAGAGTCAGGAGAAACTTTTGAGACATA
ATCCCGGTGGCGTTAGTGCAGCTCTGAAGGAGGCCAGAAGGTATGTGGCG
GAGAGCGACAACCGGACCCTGGGGGAGGACTGGTGGCCTCGGTGATGCCT
TCTTGAAATGCTACTCTTTCGCTGCTTCGTGGCATTCTCCTTCTCTCTGC
CGCTGACATGTCGATCATCTCGAGCACCGCAGTAGCGGAGAAAGGACTCA
GTTTTTGGCCAATCTACTTATTTGGCGTCTTCGTGTGATGGAGTATGGTG
GCTTTGAATTCCTGGAAACTTGAGGTCGCAAGGGGGTGTCCTTGGTGGCC
TCTTGTTTAGGCCGGACTTATGCTCCGGAT
UFO10534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6901-RA | 1581 | CG6901-RA | 40..1116 | 9..1075 | 5000 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16323926..16324663 | 348..1075 | 3060 | 97.2 | Plus |
| 3R | 32079331 | 3R | 16323677..16323854 | 172..349 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 16323454..16323619 | 9..174 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:31:04 has no hits.
UFO10534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:05 Download gff for
UFO10534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6901-RA | 1..1072 | 18..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:22 Download gff for
UFO10534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6901-RA | 38..1120 | 6..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:41 Download gff for
UFO10534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6901-RA | 38..1120 | 6..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:41 Download gff for
UFO10534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16323452..16323619 | 6..174 | 99 | -> | Plus |
| 3R | 16323680..16323852 | 175..347 | 100 | -> | Plus |
| 3R | 16323926..16324667 | 348..1080 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:22 Download gff for
UFO10534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12149174..12149341 | 6..174 | 99 | -> | Plus |
| arm_3R | 12149402..12149574 | 175..347 | 100 | -> | Plus |
| arm_3R | 12149648..12150389 | 348..1080 | 97 | | Plus |
