UFO10536.5prime Sequence
997 bp (997 high quality bases) assembled on 2012-01-06
> UFO10536.5prime
CAGTCGACATGACTCCCACGACAATAGATGGCGTCACGATACGCATCATG
CGCCCAGAGGATTATGCACAGGTAAAAGCCTATATGGAGGCTGAGTACTA
CACATCGGAGCCTCTGTGCCAGTCCAGCGGCGAACCCGTTCACCAGCAGA
ACGAGGAGATCAACGACGCCTTCAACCAGTCGATAATCGCCGAGGGCACC
AGCCTTTTGGCACTGGATGAAAACGATGGTGGCCGGATTGTGGGTCTAGT
TCTGGCATGTGCCAGTTATCCCGATAATGTGAATGCAGGAACATTGAATT
TGAAGCTCGAGAATGTGGAGGATAACGCTTGGGGTCGAATGTATCATTTA
CTAATGAAGGCCAAGCGCGAAGTCAATCTGTTTGAGCGCTACGACATCCC
GAAGGCGCTCTACTCCCACGTGACCAGCGTGGCCTCGTGGAAGAGGGGCA
AGGGCCTGGGCTCCCGCCTGGCCGCCACCCTGATGGAGCTGGGCCGATCG
AATGGTTTCCCCCTTATGATGGCCTTCTGCACTAGCTTCTACTCCGCTCG
CCAGAAGGGGGCCTTGGGCATGGAGTGCATCTATTCCATCGACTACGCCG
ACTATAAGGACGATGAAGGACGAGTGATCTTCACACCGGCAGCCCCACAC
ACAAAGCTGCGAGTGATGGCAATCAAACTGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGA
GTTCTGAGTCATTACTGGATCTATCAACAGGAGTCAAGCGAGCTCGATAT
CAAATTACGCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATCTGCCGACAGGAAGCCATCACAAACGGCTTGATGAAACTGAATC
UFO10536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18607-RA | 744 | CG18607-RA | 18..689 | 9..680 | 3360 | 100 | Plus |
| CG10659-RA | 837 | CG10659-RA | 390..668 | 374..652 | 510 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19289126..19289797 | 9..680 | 3360 | 100 | Plus |
| 2L | 23513712 | 2L | 20025144..20025422 | 652..374 | 510 | 78.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:11 has no hits.
UFO10536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:06 Download gff for
UFO10536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18607-RA | 1..675 | 9..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:26 Download gff for
UFO10536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18607-RA | 9..697 | 1..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:44 Download gff for
UFO10536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18607-RA | 9..697 | 1..688 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:44 Download gff for
UFO10536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19289117..19289805 | 1..688 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:26 Download gff for
UFO10536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15176622..15177310 | 1..688 | 98 | == | Plus |
