UFO10537.5prime Sequence
1136 bp (1031 high quality bases) assembled on 2012-01-06
> UFO10537.5prime
CAGTCGACATGAGAGTACCCACCATGCTGTCGGACATCGACCAACTGCCC
ACGCTCCAGGTGGGCGACTACACGCTCCAGTTCGAGTTGGGCGAGCCGAC
TGCCCAGGGCAAGGAGGTGGCCATCAAGGAGCTGCGCGAAACACCCGAGC
GCCAGAAGGAGGCCTCCAAGGAGCTGGCCCGTCTTCTAGAAGCGGAGACG
GACTTGCTGTACCCCAAGGGAAACGAGGAGTGGCTGATCAGATACCTGCG
GCCCTGCAAGTATTACCCGGAAAGTGCCCGTGATCTGATTAAGCGGTACT
ACGCCTTCAAGGTGAAGCACGCGGATGTGTACACCGACCTGAAGCCATCG
AACGAGGCCAACATCTTCAAGCACAACATCCTTACCGTCTTCCCCAACCG
AGATCAACTGGGTCGTCGCATTTTGGTCCTCGAACTGGGCAAGCGCTGGA
AGCACAAGCAGGTCACCCTCGATGAGGTGTTCAAGGGAGCTGTGCTCTTC
CTGGAGGCGGCCATGCTGGAGCCAGAAACACAGATCTGCGGAGCCGTTGT
GATCTTCGACATGGATGGCCTCAGTCTCCAGCAAACGTGGCAGTTTACGC
CTCCGTTCGCCAAGCGCATTGTGGACTGGCTTCAGGACTCGGTGCCGCTC
CGGATCAAGGCCATTCACATCGTGAACCAGCCGAAGATTTTCCAGGTGGT
CTTTGCCCTGTTCAAGCCCTTCCTCAAGGAGAAGCTGCGCAGCATGATCA
TCTTCCATGGCACCGATCGCGAGTCCCTGCACAAATACATGTCGCCCAAG
TGCCTGCCAGCCGCCTACGGAGGATTCCGGGAGGCCAGCCGCATCGACAG
CGACCAGTGGTACCAGCTGCTGCTCAAGTGCGACACCGAGTTCGACACCA
TCAACTCGTACGGCTACAGAAGAAGGCAAGCTTTCTAGACCATTCCGTTT
GGCGCGCGGGTCCAAGTTAGTGGTCATAATCATATCATAATCATATTCAC
AACTAGGCTAAGGAGAATCCTGGTCATGACTAGTGCTTGATTCTCACCAA
TAAAAAACGCCCCGGCGCCACGGACGTCCTGACCATCGAATGGAGTTCTT
AGGTCTTAACTGGAATCTATACAAGGAGATCTCAAG
UFO10537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RE | 2011 | CG10237-RE | 795..1712 | 9..925 | 4550 | 99.8 | Plus |
| CG10237-RC | 1418 | CG10237-RC | 202..1119 | 9..925 | 4550 | 99.8 | Plus |
| CG10237-RD | 1720 | CG10237-RD | 508..1421 | 13..925 | 4530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436157..19436633 | 918..442 | 2370 | 99.8 | Minus |
| 2L | 23513712 | 2L | 19437666..19437845 | 192..13 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 19436810..19436964 | 441..287 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 19437032..19437128 | 287..191 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:32:38 has no hits.
UFO10537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:13 Download gff for
UFO10537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 200..1117 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:11 Download gff for
UFO10537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 202..1119 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:20 Download gff for
UFO10537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 202..1119 | 9..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:20 Download gff for
UFO10537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19437666..19437850 | 4..192 | 97 | | Minus |
| 2L | 19436149..19436633 | 442..925 | 99 | <- | Minus |
| 2L | 19436810..19436963 | 288..441 | 100 | <- | Minus |
| 2L | 19437032..19437126 | 193..287 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:11 Download gff for
UFO10537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19436149..19436633 | 442..925 | 99 | <- | Minus |
| arm_2L | 19436810..19436963 | 288..441 | 100 | <- | Minus |
| arm_2L | 19437032..19437126 | 193..287 | 100 | <- | Minus |
| arm_2L | 19437666..19437850 | 4..192 | 97 | | Minus |
