UFO10539.5prime Sequence
1012 bp (1012 high quality bases) assembled on 2012-01-06
> UFO10539.5prime
CAGTCGACATGTTGTTCCGTTCGCAAACCCATGTTTTTCCAGGTGTGTAC
ATGATGGTGGCGATGCTCGTGGTCGCCTTGAGTGGCTACCAGGTGCAGTC
CTATAGCGCCAAGGATATTCTTGCCGATGTCTTGATGACGGATCTGCTGA
ATCGCATGGACAAAGACATGCAGGTGGGCTATTACGACGTGGGCAACGAG
GCAGCCGCTGGCTCCAAGGACAACGTGGACCTGGTCTCCCGGTCGGAGTA
CGCGAGGCTGTGTGACGGCGGAAGCGACTGCATCCTGCAATCGGGCTCGG
CATCGGGAGCTGCCTCCCATCCTTCGCTGCGGGATGACGAGTTTCTGCAG
CACAGTTCGCTGTGGGGTCACCAGTTCATCTCCGGCGGAATGGGAGAGGG
TCCCAACAGGTATCCCACTATAGTGAAGAACGACGCCGGCCTGCCTGCCT
ACTGCAACCCTCCTAATCCCTGCCCTGAGGGCTACGACATGGAGACGCAA
GGCGGCAGCTGCATTGTCGACTTCGAAAACACGGCCATCTTCAGCCGGGA
GTTCCAGGCCGCTCAGGACTGTACCTGCGACAACGAGCATATGTTCGACT
GCTCGGAACAGGATAGTGCTGATGTGGGCGGCGACAAGGGTGACCTGAAC
TCCGCCGTGGAGCAGTACATCATGCAGATGGGCCAGGAGAACAGCCTGAA
CAACGTTAACAGCCTGGCTAAGAAGGCCGGATATCCTGTGATGCCCGATC
CTCGGCTGGACGACGCGGTCATAAACCCCGTTCCTCCAGGGCGACCGCTT
GCCCATAGCCGCCAAGAAGGCAACCTTTTATTCACGCAAGCTTTCTAGAC
CATTTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATATTCATAATCATAA
TCATATTCATAATCCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGAATTCTCACCAATAAAAAACGCCGGCGGCAACCGAGCCGTTCTGAA
CAAATCCCGAAT
UFO10539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 7B2-RB | 1148 | CG1168-RB | 153..977 | 9..833 | 4080 | 99.8 | Plus |
| 7B2-RA | 1133 | CG1168-RA | 172..962 | 43..833 | 3910 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5376999..5377804 | 28..833 | 3935 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:32:50 has no hits.
UFO10539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:15 Download gff for
UFO10539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 7B2-RB | 173..1010 | 1..840 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:19 Download gff for
UFO10539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 7B2-RB | 173..1010 | 1..840 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:27 Download gff for
UFO10539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 7B2-RB | 147..984 | 1..840 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:27 Download gff for
UFO10539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5376999..5377811 | 28..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:19 Download gff for
UFO10539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1202721..1203533 | 28..840 | 99 | | Plus |
