UFO10540.5prime Sequence
1176 bp (1055 high quality bases) assembled on 2012-01-06
> UFO10540.5prime
CAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGCATCCTAAA
ATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAGGAGGAGGA
GAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGGGCCATATG
CGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCCTGTCTGGC
GAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAGTGCGTGCG
CACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATTGCGCGGGC
GTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGGAGTTTGAC
GAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGATTGATATTCC
ATTCGATGAAGCTGACGTTGAACCTCTAAAAATTTTAAAGGCCCAGTCGA
CGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTTAGAACGG
GAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACTTCAAGCA
CAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGAGCGGGGT
TGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTGCGAGGGC
AACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCCTCAACCT
CTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCACCAGTATG
TGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTTCCCAGAC
GTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAGCAGCTGG
CGACTTTCTGGAGTCTACAAGACGCCGAACGCCTACAACTGCGTGGCTAC
GTGCTTCTTCATCGATTGTGCCATAATGTTATTGACTTCATACGCACATT
TACAATCCTCGTGCCTGTGCATTTGGGTGAATCTCGGGCGCTGCTGTACA
TTTTAGCGACGTCAGCGGCAAACAGCATCGAGCCGCTTCGAAGACCTTTG
CATATCATGAAGCGTAGAATCGTATCCGAGAAATCCCGCACCGCATCGGT
AACAGGTACCCAGACCGTTCTTCAATGAAACAAAGCGGTACCAAATCTTT
CCTGGAGTCTGCGCCCAGCCGGGTAA
UFO10540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11596-RC | 1791 | CG11596-RC | 104..1289 | 9..1172 | 5100 | 96.6 | Plus |
| CG11596-RE | 1765 | CG11596-RE | 104..1263 | 9..1172 | 4690 | 94.4 | Plus |
| CG11596-RB | 1648 | CG11596-RB | 95..1146 | 143..1172 | 4430 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1928333..1928580 | 142..389 | 1240 | 100 | Plus |
| X | 23542271 | X | 1929454..1929703 | 701..948 | 1150 | 99.2 | Plus |
| X | 23542271 | X | 1928998..1929170 | 387..559 | 865 | 100 | Plus |
| X | 23542271 | X | 1929244..1929384 | 560..700 | 705 | 100 | Plus |
| X | 23542271 | X | 1927786..1927920 | 9..143 | 675 | 100 | Plus |
| X | 23542271 | X | 1929773..1929880 | 954..1053 | 185 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:32:56 has no hits.
UFO10540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:15 Download gff for
UFO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RC | 100..1144 | 1..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:24 Download gff for
UFO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RC | 97..1141 | 1..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:30 Download gff for
UFO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RC | 97..1141 | 1..1035 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:30 Download gff for
UFO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1927779..1927919 | 1..142 | 97 | -> | Plus |
| X | 1928334..1928580 | 143..389 | 100 | -> | Plus |
| X | 1929001..1929170 | 390..559 | 100 | -> | Plus |
| X | 1929244..1929384 | 560..700 | 100 | -> | Plus |
| X | 1929454..1929711 | 701..953 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:24 Download gff for
UFO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1821812..1821952 | 1..142 | 97 | -> | Plus |
| arm_X | 1822367..1822613 | 143..389 | 100 | -> | Plus |
| arm_X | 1823034..1823203 | 390..559 | 100 | -> | Plus |
| arm_X | 1823277..1823417 | 560..700 | 100 | -> | Plus |
| arm_X | 1823487..1823744 | 701..953 | 98 | -> | Plus |
