UFO10542.5prime Sequence
1094 bp (1013 high quality bases) assembled on 2012-01-06
> UFO10542.5prime
CAGTCGACATGGCTGCTAGATTCATACAGAAAATTCTCAATCAACTGGGT
TTGATTGCAGCGCGTGATGCTCCGGCGGTGACTGCGACGCCAGCAGTGAG
CCAGGTCAACGCGACTCCCGCCGCCAGCCGGTCCTACTCCTCCGGCACCA
AGAAAGTCACCCTCATCCCTGGCGATGGCATCGGACCTGAGATCTCTGCG
GCCGTGCAGAAAATCTTCACCGCCGCCAATGTCCCCATCGAGTGGGAGGC
CGTGGACGTGACCCCCGTCCGGGGACCCGACGGAAAGTTCGGCATCCCAC
AGGCCGCCATTGACTCGGTGAACACGAACAAGATCGGCCTGAAGGGTCCT
CTGATGACGCCCGTCGGCAAGGGCCATCGGTCTCTGAATCTGGCCCTGCG
CAAGGAGTTCAATCTGTACGCCAACGTGCGTCCCTGCCGCAGTCTCGAGG
GCTACAAGACGCTGTACGACGATGTGGACGTGGTCACCATCCGTGAGAAC
ACCGAGGGCGAGTACTCCGGCATCGAGCACGAGATCGTCGACGGCGTCGT
TCAGAGCATCAAGCTGATCACCGAGGAAGCCTCCAAGCGTGTGGCCGAGT
ACGCCTTCCAGTACGCCAAGAACAACAACCGCAAGAAGGTCACCGTGGTG
CACAAGGCGAACATTATGCGCATGTCCGATGGTCTCTTCCTGCGCTGCGT
CCGCGACATGGCCCAGAGTTCCCAGAAATCCAGTTCGAAGAGAAGTATCT
GGATACGGTGTGCCTGAACATGGTCCAGAACCCCGGAAAATACGACGTGC
TGGTCATGCCCAATCTGTACGGTGATATTCTGTCTGACATGTGCGCCGGT
TTGGTGGGCGGCCTCGGCCTGACGCCCTCCGGCACCTGGGCCTGAACGGT
GCCCTGTTCGAGTCTGTGCACGAACCGCCCCCGATATTGCCGGCAGGACT
GCCAATCCCCTGCCCTGTGCTGTCGGGGTCATGATGCTGCGCCACATGGA
GCTCACACGTACGCGATAATTCAAGCGTGCGCTTTCAAACATCAGGAGGA
AATACTCTCAGCGATCTGGGCGCGTGCCAATGCCTCAGATCACG
UFO10542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0156-RD | 1395 | CG12233-RD | 106..1199 | 9..1080 | 4840 | 97.4 | Plus |
| l(1)G0156-RC | 2029 | CG12233-RC | 133..1130 | 105..1080 | 4360 | 97.1 | Plus |
| l(1)G0156-RA | 1332 | CG12233-RA | 139..1136 | 105..1080 | 4360 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19519903..19520299 | 668..272 | 1985 | 100 | Minus |
| X | 23542271 | X | 19520659..19520831 | 273..101 | 865 | 100 | Minus |
| X | 23542271 | X | 19519415..19519626 | 1005..802 | 665 | 95.3 | Minus |
| X | 23542271 | X | 19519694..19519831 | 804..668 | 640 | 99.3 | Minus |
| X | 23542271 | X | 19521326..19521396 | 106..36 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 8837967..8838119 | 465..617 | 330 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:33:13 has no hits.
UFO10542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:17 Download gff for
UFO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RB | 105..1117 | 1..1005 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:34 Download gff for
UFO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RD | 99..1111 | 1..1005 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:39 Download gff for
UFO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RD | 99..1111 | 1..1005 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:39 Download gff for
UFO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19520660..19520827 | 105..272 | 100 | <- | Minus |
| X | 19521328..19521396 | 36..104 | 100 | <- | Minus |
| X | 19519904..19520298 | 273..667 | 100 | <- | Minus |
| X | 19519696..19519831 | 668..802 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:34 Download gff for
UFO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19413729..19413864 | 668..802 | 99 | <- | Minus |
| arm_X | 19413937..19414331 | 273..667 | 100 | <- | Minus |
| arm_X | 19414693..19414860 | 105..272 | 100 | <- | Minus |
| arm_X | 19415361..19415429 | 36..104 | 100 | <- | Minus |
