UFO10543.5prime Sequence
1022 bp (900 high quality bases) assembled on 2012-01-06
> UFO10543.5prime
CAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGCTGCTCCTG
CTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGACCAGGACGT
CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGAAA
CCGTGCTCGACATTGTCGTCACCTGGAACACGCGCGACAACACCAACGAA
TCAATCTGTGAGTTCGGCATCGATGGACTGCATCAGCGAGTGAAGGCGAC
GCAAATGCCCACGAAATTCGTGGATGGTGGAGCCAAAAAGGCCACCCAGT
ATATACATCGTGTGACGCTGTCCCACCTGAAACCGAATAGCACCTATCTC
TACCACTGTGGCAGTGAGTTGGGCTGGTCCGCCACCTATTGGTTTCGGAC
GCGATTCGATCACGCCGACTGGTCGCCCTCGTTGGCGATCTACGGCGATA
TGGGCGTGGTGAATGCGGCATCCCTTCCAGCGCTGCAGCGTGAAACGCAG
AGCGGCCAGTACGACGCCATCATCCATGTGGGAGACTTCGCCTACGACAT
GGACTGGGAAAACGGAGAGGTCGGCGACGAGTTTATGCGCCAGGTGGAGA
ACATAGCCGCCTACTTACCATATATGGTGTGCGTGGGCAACCCACGAGGA
GAAGTACAACTTTTCGCACTACATCAATCGGTTCAGCATGCCGGGTGGAT
CGGATAACATGTTCTATAGCTTCGATCTTGGACCGGTGCACTTCATCGGT
TTTAGCACAGAAGTCTATTATTTCACTAAGTTCGGGATCAAGAGATCGTG
ATGCAGTACGACTGGCTGGAGCGGGATTGATCGAGGCAACAGCCAGAAAA
CCGGAGAACCTCCCTGGATAATCACATACGGGCATCCGCCCATGTACTGC
AACATTGACAACGAATTGAATGTGTCAATCATGAGAAATCGTTCGAAAGG
GTCAGCCATGCTGGATTCTTCGGGCGGAGCCCCTTTTATCATACGGCGAA
AATATGGATTGGGGGCTCTCAA
UFO10543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RE | 1868 | CG1637-RE | 341..1362 | 9..1016 | 4475 | 96.9 | Plus |
| CG1637-RA | 1773 | CG1637-RA | 246..1267 | 9..1016 | 4475 | 96.9 | Plus |
| CG1637-RB | 2196 | CG1637-RB | 246..425 | 9..185 | 710 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10873136..10873479 | 656..312 | 1660 | 99.4 | Minus |
| X | 23542271 | X | 10872736..10873055 | 967..657 | 995 | 92.5 | Minus |
| X | 23542271 | X | 10873541..10873710 | 315..146 | 850 | 100 | Minus |
| X | 23542271 | X | 10877415..10877553 | 147..9 | 695 | 100 | Minus |
| X | 23542271 | X | 10875345..10875479 | 551..417 | 285 | 80.7 | Minus |
| X | 23542271 | X | 10875060..10875145 | 767..682 | 220 | 83.7 | Minus |
| X | 23542271 | X | 10871630..10871675 | 554..509 | 185 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:20 has no hits.
UFO10543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:17 Download gff for
UFO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RA | 247..1264 | 1..1005 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:38 Download gff for
UFO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RA | 238..1255 | 1..1005 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:44 Download gff for
UFO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RA | 238..1255 | 1..1005 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:44 Download gff for
UFO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10877415..10877561 | 1..147 | 97 | | Minus |
| X | 10872690..10873055 | 657..1008 | 92 | <- | Minus |
| X | 10873136..10873479 | 312..656 | 99 | <- | Minus |
| X | 10873545..10873708 | 148..311 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:38 Download gff for
UFO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10766723..10767088 | 657..1008 | 92 | <- | Minus |
| arm_X | 10767169..10767512 | 312..656 | 99 | <- | Minus |
| arm_X | 10767578..10767741 | 148..311 | 100 | <- | Minus |
| arm_X | 10771448..10771594 | 1..147 | 97 | | Minus |
