UFO10544.5prime Sequence
1175 bp (1044 high quality bases) assembled on 2012-01-06
> UFO10544.5prime
CAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAGACGGATTG
GAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATGCGAAAATT
AGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCATGCCAAGG
ACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGGATGAGAGG
AGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCCAAGGAGTA
CAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACTAGTGGACA
AGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGGGTGAGATT
CAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTGGTGGCCAA
GAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAAAAAGAAAA
AGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACCAATCTAAC
GCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGTAGCAAAAA
GAAAAAGTCCAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCGACAATCCCGACTGTCCCATCGAGTGGTTTCACTTCGCTT
GTGTTGGCCTCACCACAAAGCCAAAGGGCAAGTGGTTCTGTCCCAAGTGC
ACGCAGACAGAAAGAAGAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCACCCGAGCGTTCTGAACAAATTCAGATGGAGTT
CTGAGGTCATTACTGATTTATCAACAGGAGTCCCAGCGAGCTCGATATCA
AATTACGCCCCGCCTGCACCTCATCGGCAGTACTGTTGTATTCATTAGCA
TTCTGCGACATTGAAAGCCATCAAAACGGAATGAATGAACCTGAATTCGC
CAAGCGCATTCTCCACCTTTGTTCG
UFO10544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9293-RB | 1002 | CG9293-RB | 100..912 | 9..820 | 4025 | 99.8 | Plus |
| CG9293-RA | 1044 | CG9293-RA | 100..654 | 9..563 | 2775 | 100 | Plus |
| CG9293-RA | 1044 | CG9293-RA | 694..954 | 561..820 | 1265 | 99.2 | Plus |
| Ing3-RA | 2298 | CG6632-RA | 1997..2152 | 647..802 | 225 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13386757..13387114 | 402..45 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 13386099..13386259 | 722..562 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 13386530..13386690 | 563..403 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 13385938..13386036 | 820..723 | 430 | 98 | Minus |
| X | 23542271 | X | 18650864..18651019 | 802..647 | 225 | 76.3 | Minus |
| 2L | 23513712 | 2L | 13387176..13387213 | 46..9 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:28 has no hits.
UFO10544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:18 Download gff for
UFO10544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RB | 79..899 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:41 Download gff for
UFO10544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RB | 92..912 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:48 Download gff for
UFO10544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RB | 92..912 | 1..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:48 Download gff for
UFO10544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13386530..13386690 | 403..563 | 100 | <- | Minus |
| 2L | 13385938..13386036 | 723..820 | 97 | <- | Minus |
| 2L | 13386099..13386257 | 564..722 | 100 | <- | Minus |
| 2L | 13386757..13387113 | 46..402 | 100 | <- | Minus |
| 2L | 13387177..13387221 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:41 Download gff for
UFO10544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13385938..13386036 | 723..820 | 97 | <- | Minus |
| arm_2L | 13386099..13386257 | 564..722 | 100 | <- | Minus |
| arm_2L | 13386530..13386690 | 403..563 | 100 | <- | Minus |
| arm_2L | 13386757..13387113 | 46..402 | 100 | <- | Minus |
| arm_2L | 13387177..13387221 | 1..45 | 91 | | Minus |
