UFO10546.5prime Sequence
851 bp (850 high quality bases) assembled on 2012-01-06
> UFO10546.5prime
CAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGCTATTGCTA
GTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCTCAAGATCA
GAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGC
CCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGATCCGGCGGA
CGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTC
CGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCATTCGCACA
GTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACT
CATACACCAACACAAACCTCATCCACAATCCCAACAACATCGACTTCGAC
ACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGCATCCACCACAA
CGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCAGTAGCACCACC
ACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAGCAACCGCTGTT
CCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGGCGATGGCATCG
ATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACGATAAGGACTAT
GACTATAACAAGGAGCTGGACAAAGAAATCGACATCGATGGTCCCGAGCC
GGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGAAACTGGTCACA
TACCCACTACGGATGAAATCGATGTGGATGGCGGCGATGACGATGACAAT
GGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAACGATGGAGATAT
T
UFO10546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RD | 1869 | CG10497-RD | 337..1179 | 9..851 | 4200 | 99.9 | Plus |
Sdc-RA | 2482 | CG10497-RA | 337..1182 | 9..851 | 4160 | 99.5 | Plus |
Sdc-RH | 2245 | CG10497-RH | 195..945 | 101..851 | 3740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21398078..21398580 | 851..349 | 2500 | 99.8 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 348..210 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 209..99 | 555 | 100 | Minus |
2R | 25286936 | 2R | 21480091..21480183 | 101..9 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 286..447 | 173 | 61.2 | Plus |
UFO10546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:11 Download gff for
UFO10546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RD | 336..1178 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:58 Download gff for
UFO10546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RD | 337..1179 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:10 Download gff for
UFO10546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RD | 337..1179 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:10 Download gff for
UFO10546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21398078..21398580 | 349..851 | 99 | <- | Minus |
2R | 21399175..21399313 | 210..348 | 100 | <- | Minus |
2R | 21412311..21412418 | 102..209 | 100 | <- | Minus |
2R | 21480091..21480183 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:58 Download gff for
UFO10546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17285583..17286085 | 349..851 | 99 | <- | Minus |
arm_2R | 17286680..17286818 | 210..348 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 102..209 | 100 | <- | Minus |
arm_2R | 17367596..17367688 | 9..101 | 100 | | Minus |