Clone UFO10546 Report

Search the DGRC for UFO10546

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:105
Well:46
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptSdc-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10546.5prime Sequence

851 bp (850 high quality bases) assembled on 2012-01-06

> UFO10546.5prime
CAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGCTATTGCTA
GTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCTCAAGATCA
GAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGC
CCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGATCCGGCGGA
CGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTC
CGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCATTCGCACA
GTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACT
CATACACCAACACAAACCTCATCCACAATCCCAACAACATCGACTTCGAC
ACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGCATCCACCACAA
CGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCAGTAGCACCACC
ACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAGCAACCGCTGTT
CCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGGCGATGGCATCG
ATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACGATAAGGACTAT
GACTATAACAAGGAGCTGGACAAAGAAATCGACATCGATGGTCCCGAGCC
GGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGAAACTGGTCACA
TACCCACTACGGATGAAATCGATGTGGATGGCGGCGATGACGATGACAAT
GGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAACGATGGAGATAT
T

UFO10546.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RD 1869 CG10497-RD 337..1179 9..851 4200 99.9 Plus
Sdc-RA 2482 CG10497-RA 337..1182 9..851 4160 99.5 Plus
Sdc-RH 2245 CG10497-RH 195..945 101..851 3740 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21398078..21398580 851..349 2500 99.8 Minus
2R 25286936 2R 21399175..21399313 348..210 695 100 Minus
2R 25286936 2R 21412311..21412421 209..99 555 100 Minus
2R 25286936 2R 21480091..21480183 101..9 465 100 Minus
Blast to na_te.dros performed 2014-11-27 20:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2533 286..447 173 61.2 Plus

UFO10546.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:11 Download gff for UFO10546.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RD 336..1178 9..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:58 Download gff for UFO10546.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RD 337..1179 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:10 Download gff for UFO10546.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RD 337..1179 9..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:10 Download gff for UFO10546.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21398078..21398580 349..851 99 <- Minus
2R 21399175..21399313 210..348 100 <- Minus
2R 21412311..21412418 102..209 100 <- Minus
2R 21480091..21480183 9..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:58 Download gff for UFO10546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17285583..17286085 349..851 99 <- Minus
arm_2R 17286680..17286818 210..348 100 <- Minus
arm_2R 17299816..17299923 102..209 100 <- Minus
arm_2R 17367596..17367688 9..101 100   Minus