UFO10547.5prime Sequence
1057 bp (1033 high quality bases) assembled on 2012-01-06
> UFO10547.5prime
CAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGGCTGAGATC
GAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCCTCCAAGGC
CAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAAGAAACTCA
GGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAGAACAGGAA
CGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGCGGCAGTCC
CAGGAATCTCAGCGATGCCAGCGAAGGCGAATTGCAAGAGATTTGCGAAG
AGTATTACGAGCGTATGTATATTTGTGAAGGCCAGAAATGGGATCTGGAA
TACGAAGTCAGGAAAAAAGACTGGGAGATCAACGATCTCAATGCCCAAGT
TAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAAGGTCTCCA
AATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTGAGTTCAAC
TTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACGCTGGAGGA
GGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCCCGGAGATG
CCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGAAATGGAAGCCATCACAAACGGCATG
ATGAACCTGATCGCCAGCGCATCAGCACTTGTCGCCTTGCGTATATATTT
GCCCATGGTGAAACCGGGGGCGAAGAAGTTGTCCATAATTGGCCAACGTT
TAAATCG
UFO10547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-RF | 1129 | CG7178-RF | 110..733 | 9..632 | 3120 | 100 | Plus |
| wupA-RC | 1160 | CG7178-RC | 141..764 | 9..632 | 3120 | 100 | Plus |
| wupA-RG | 1343 | CG7178-RG | 336..947 | 21..632 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18106681..18106822 | 563..422 | 710 | 100 | Minus |
| X | 23542271 | X | 18113447..18113577 | 152..22 | 655 | 100 | Minus |
| X | 23542271 | X | 18113257..18113382 | 277..152 | 630 | 100 | Minus |
| X | 23542271 | X | 18109470..18109572 | 377..275 | 515 | 100 | Minus |
| X | 23542271 | X | 18105964..18106034 | 632..562 | 355 | 100 | Minus |
| X | 23542271 | X | 18106888..18106933 | 421..376 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:32:24 has no hits.
UFO10547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:12 Download gff for
UFO10547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RF | 95..735 | 1..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:03 Download gff for
UFO10547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RC | 132..772 | 1..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:13 Download gff for
UFO10547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RC | 132..772 | 1..642 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:13 Download gff for
UFO10547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18106681..18106822 | 422..563 | 100 | <- | Minus |
| X | 18106888..18106931 | 378..421 | 100 | <- | Minus |
| X | 18109470..18109570 | 277..377 | 100 | <- | Minus |
| X | 18113258..18113381 | 153..276 | 100 | <- | Minus |
| X | 18113447..18113575 | 24..152 | 100 | <- | Minus |
| X | 18105956..18106032 | 564..642 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:03 Download gff for
UFO10547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18000714..18000855 | 422..563 | 100 | <- | Minus |
| arm_X | 18000921..18000964 | 378..421 | 100 | <- | Minus |
| arm_X | 18003503..18003603 | 277..377 | 100 | <- | Minus |
| arm_X | 18007291..18007414 | 153..276 | 100 | <- | Minus |
| arm_X | 18007480..18007608 | 24..152 | 100 | <- | Minus |
| arm_X | 17999989..18000065 | 564..642 | 94 | <- | Minus |
