UFO10548.5prime Sequence
952 bp (932 high quality bases) assembled on 2012-01-06
> UFO10548.5prime
CAGTCGACATGCTGGCACTGCCTTTGCTGACTCTGGCGGTCCTCGCCAGC
TGCGGCTACTCCGTGGACGCCTACTCCAAGTACGGCCGTGGATGCGGGGA
CATTGGCTGCCTGCCCACCGAGGAGTGCGTCATCACCAGCGACTCGTGCA
GCTACAACCAGCGTGACGGCAAGGATTGCGGCAACTATCCCACCTGCAAA
CGGCGCTCCGGCGGAGGATCATCCGCCTCGAACAGCAGCCCCAACTTGGC
AGCCCCCTCGGCCAATCCGTCAGAGGTGAGCCATAACGCATACGCCCCGA
ATGCCCCAAGTGCCCCGAGTGCCCCGTTGCCGGAAGCGGATGCGAGCGGT
GGTGCTGGCTACGGTGGTGCTGCGGGCGGTGGTGGAAGCGGCGGATATGG
TGGTGGTTTCTCGGCTGGCGGCCACTCCCTGTACCCCAGCCTACCCAACT
CAAACGGCGGCGGCGGTGGTGCGGCTCCCTACAATCCATATGGCAGTGGT
GGCGGCAACGGTGGATACGGCGGCTACAATCCCTACAACGGCGGCTACCA
GCCACCATCTTCTGGCGGCTATCAACCTCAAGCTCCTGGCGGATACCAAC
CCAGACCGGGCTACACGCCACCCGCCCCAGGCTACGATAACAACGGTGGT
GGTGGTGCCCAGAAACCCAAGGACAAAGAGGGCGGCTTCTTCTCCAATTT
CTTCTCGAATCCGGCGGTGAGTCAAGCGGTGTCCGGTATCATTGCAGGCC
AGATAGCCAAGCAACTGCAAGGCGGCGGAGCCGGAGGACCAGGTGGTGGA
CAGCCCGGCTGGCGGCTACCAGCCAGCGGTGGCTATGGCGGAGGACAACA
GCAGAGCGGCGGATTCGGTGGTAGTTACATACTTGGCGGTCTCTTGGGAT
CCGTTCTATCTCGGCGGCGGTGGTGGTTATTGCACGCCGCTGGCCGGCGT
AT
UFO10548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32521-RD | 1691 | CG32521-RD | 152..1087 | 9..944 | 4425 | 98.6 | Plus |
| CG32521-RB | 1782 | CG32521-RB | 243..1178 | 9..944 | 4425 | 98.6 | Plus |
| CG32521-RA | 1714 | CG32521-RA | 175..1110 | 9..944 | 4425 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21205929..21206587 | 927..271 | 2980 | 98.5 | Minus |
| X | 23542271 | X | 21211080..21211274 | 273..79 | 975 | 100 | Minus |
| X | 23542271 | X | 21211687..21211756 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:32:31 has no hits.
UFO10548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:13 Download gff for
UFO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32521-RB | 239..1182 | 1..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:07 Download gff for
UFO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32521-RA | 171..1114 | 1..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:16 Download gff for
UFO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32521-RA | 171..1114 | 1..949 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:16 Download gff for
UFO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21205910..21206584 | 274..949 | 97 | <- | Minus |
| X | 21211080..21211274 | 79..273 | 100 | <- | Minus |
| X | 21211687..21211760 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:07 Download gff for
UFO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21076937..21077611 | 274..949 | 97 | <- | Minus |
| arm_X | 21082107..21082301 | 79..273 | 100 | <- | Minus |
| arm_X | 21082714..21082787 | 1..78 | 94 | | Minus |
