UFO10550.5prime Sequence
1088 bp (1001 high quality bases) assembled on 2012-01-06
> UFO10550.5prime
CAGTCGACATGTTGCGTACTCTGTCACGCGTTAGCGAATTGCCCATTATT
GTTAAGCAACTGCAAAAAAATGCAGCCCAAGCAGGTGTTTCGAAAACCAA
CAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGCCCTTCAAGCTGC
ACCGCCTGGACGAAGGACCCGCCACGGAAGTGAAGCTGACCAAGGATCAG
GCCCTTAAGTACTACACACAGATGCAGACGATCCGTCGGTTGGAGACGGC
CGCCGGTAATCTGTACAAGGAGAAGATCATTCGCGGCTTCTGTCATCTGT
ATTCCGGCCAGGAGGCATGCGCCGTTGGCATGAAGGCGGCGATGCGGGAT
GTGGACAACATCATATCGGCGTACCGTGTCCACGGATGGACCTACCTGAT
GGGCGTCTCACCCAGCGGCGTACTGGCTGAGCTCACCGGTGTCCAGGGTG
GCTGTGCCCGCGGCAAGGGTGGCTCCATGCACATGTACGCACCGAACTTC
TACGGAGGCAATGGCATCGTGGGTGCTCAAGTTCCTTTGGGCGCCGGCGT
TGGCTTGGCCTGCAAGTACAAGGGCAATGGCGGCATGTGCCTGGCCCTCT
ACGGTGATGGTGCCGCCAATCAGGGACAGGTGTTCGAGGCCTACAACATG
GCCTACCTGTGGAAACTGCCTGTGATCTTTGTCTGCGAGAACAACAACTA
CGGAATGGGTACCAGTTCTGAGCGTGCTTCCTGCAACACTGATTACTATA
CCCGCGGCGACGCTCTGCCCGGAATCTGGGTGGACGGCATGGATGTGCTG
GCCGTGCGCAGCGCCCCCGAGTTCGCCATCACTATGTGAACACTCACGGA
CCTTTGGTGATGGAGACGACACGTACCGATACTCTGGACACTCCATGTCC
GATCCGGGCACATCGTACCGCACACGCGAGGAGATCCAGGAGGTGCGCCA
GAGCGTGATCCCTCACCCTCCTTCAAGGAGCTGTGCATCGACTGGGTTCT
GAATACCACCCGATGAAGTTAAGGCCATCGACTCGAAGGTAGGCAGGAAG
TCGACAAGCCCCCGCCCTTCCACATGTCCGATGGCGAA
UFO10550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0334-RD | 1667 | CG7010-RD | 115..1196 | 9..1087 | 4870 | 97.3 | Plus |
l(1)G0334-RA | 1760 | CG7010-RA | 208..1289 | 9..1087 | 4870 | 97.3 | Plus |
l(1)G0334-RB | 1992 | CG7010-RB | 500..1521 | 69..1087 | 4570 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4703554..4704120 | 137..703 | 2760 | 99.1 | Plus |
X | 23542271 | X | 4704194..4704518 | 702..1024 | 1265 | 95.4 | Plus |
X | 23542271 | X | 4702824..4702892 | 69..137 | 345 | 100 | Plus |
X | 23542271 | X | 4702532..4702591 | 9..68 | 300 | 100 | Plus |
X | 23542271 | X | 4706325..4706580 | 458..713 | 235 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:02 has no hits.
UFO10550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:20 Download gff for
UFO10550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0334-RD | 107..1164 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:58 Download gff for
UFO10550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0334-RA | 200..1257 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:02 Download gff for
UFO10550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0334-RA | 200..1257 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:02 Download gff for
UFO10550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4702524..4702591 | 1..68 | 95 | -> | Plus |
X | 4702824..4702892 | 69..137 | 100 | -> | Plus |
X | 4703555..4704119 | 138..702 | 99 | -> | Plus |
X | 4704195..4704518 | 703..1024 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:58 Download gff for
UFO10550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4596557..4596624 | 1..68 | 95 | -> | Plus |
arm_X | 4596857..4596925 | 69..137 | 100 | -> | Plus |
arm_X | 4597588..4598152 | 138..702 | 99 | -> | Plus |
arm_X | 4598228..4598551 | 703..1024 | 96 | | Plus |