Clone UFO10550 Report

Search the DGRC for UFO10550

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:105
Well:50
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptl(1)G0334-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10550.5prime Sequence

1088 bp (1001 high quality bases) assembled on 2012-01-06

> UFO10550.5prime
CAGTCGACATGTTGCGTACTCTGTCACGCGTTAGCGAATTGCCCATTATT
GTTAAGCAACTGCAAAAAAATGCAGCCCAAGCAGGTGTTTCGAAAACCAA
CAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGCCCTTCAAGCTGC
ACCGCCTGGACGAAGGACCCGCCACGGAAGTGAAGCTGACCAAGGATCAG
GCCCTTAAGTACTACACACAGATGCAGACGATCCGTCGGTTGGAGACGGC
CGCCGGTAATCTGTACAAGGAGAAGATCATTCGCGGCTTCTGTCATCTGT
ATTCCGGCCAGGAGGCATGCGCCGTTGGCATGAAGGCGGCGATGCGGGAT
GTGGACAACATCATATCGGCGTACCGTGTCCACGGATGGACCTACCTGAT
GGGCGTCTCACCCAGCGGCGTACTGGCTGAGCTCACCGGTGTCCAGGGTG
GCTGTGCCCGCGGCAAGGGTGGCTCCATGCACATGTACGCACCGAACTTC
TACGGAGGCAATGGCATCGTGGGTGCTCAAGTTCCTTTGGGCGCCGGCGT
TGGCTTGGCCTGCAAGTACAAGGGCAATGGCGGCATGTGCCTGGCCCTCT
ACGGTGATGGTGCCGCCAATCAGGGACAGGTGTTCGAGGCCTACAACATG
GCCTACCTGTGGAAACTGCCTGTGATCTTTGTCTGCGAGAACAACAACTA
CGGAATGGGTACCAGTTCTGAGCGTGCTTCCTGCAACACTGATTACTATA
CCCGCGGCGACGCTCTGCCCGGAATCTGGGTGGACGGCATGGATGTGCTG
GCCGTGCGCAGCGCCCCCGAGTTCGCCATCACTATGTGAACACTCACGGA
CCTTTGGTGATGGAGACGACACGTACCGATACTCTGGACACTCCATGTCC
GATCCGGGCACATCGTACCGCACACGCGAGGAGATCCAGGAGGTGCGCCA
GAGCGTGATCCCTCACCCTCCTTCAAGGAGCTGTGCATCGACTGGGTTCT
GAATACCACCCGATGAAGTTAAGGCCATCGACTCGAAGGTAGGCAGGAAG
TCGACAAGCCCCCGCCCTTCCACATGTCCGATGGCGAA

UFO10550.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0334-RD 1667 CG7010-RD 115..1196 9..1087 4870 97.3 Plus
l(1)G0334-RA 1760 CG7010-RA 208..1289 9..1087 4870 97.3 Plus
l(1)G0334-RB 1992 CG7010-RB 500..1521 69..1087 4570 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4703554..4704120 137..703 2760 99.1 Plus
X 23542271 X 4704194..4704518 702..1024 1265 95.4 Plus
X 23542271 X 4702824..4702892 69..137 345 100 Plus
X 23542271 X 4702532..4702591 9..68 300 100 Plus
X 23542271 X 4706325..4706580 458..713 235 74.5 Plus
Blast to na_te.dros performed on 2014-11-27 20:34:02 has no hits.

UFO10550.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:20 Download gff for UFO10550.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RD 107..1164 1..1055 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:58 Download gff for UFO10550.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RA 200..1257 1..1055 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:02 Download gff for UFO10550.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RA 200..1257 1..1055 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:02 Download gff for UFO10550.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4702524..4702591 1..68 95 -> Plus
X 4702824..4702892 69..137 100 -> Plus
X 4703555..4704119 138..702 99 -> Plus
X 4704195..4704518 703..1024 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:58 Download gff for UFO10550.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4596557..4596624 1..68 95 -> Plus
arm_X 4596857..4596925 69..137 100 -> Plus
arm_X 4597588..4598152 138..702 99 -> Plus
arm_X 4598228..4598551 703..1024 96   Plus