UFO10551.5prime Sequence
1155 bp (1023 high quality bases) assembled on 2012-01-06
> UFO10551.5prime
CAGTCGACATGCAGCGACGAGAACGGCAAGCAAGTGGCGGTGGCCCACAA
ACGACAACTGCCGGTCCATCCGCTGGTAATGTGGCAAATGCCACCACAGC
CCTAGCCGGTGGTAAAAGCTCAAGCAATAACATGTATTCCACCCGCCAAT
CTGTAAGCACCACGACCGGTGTACTTATGGTCGGACCAAATTTTCGTGTC
GGTAAAAAAATTGGCTGTGGTAATTTTGGCGAATTGCGTTTAGGCAAAAA
CCTTTACAACAATGAACATGTAGCAATAAAAATGGAGCCTATGAAGTCAA
AGGCTCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCA
CATGCAGAGGGTGTACCAGAAGTATATTACTTCGGCCCATGCGGCAAATA
CAATGCTCTTGTTATGGAGTTGCTTGGTCCATCACTTGAAGATTTATTCG
ATATTTGCGGCAGACGTTTCACTTTGAAGAGCGTACTTCTGATAGCTATA
CAATTACTCCACCGGATCGAATATGTTCATAGTCGGCACTTAATATATAG
GGATGTGAAACCAGAGAACTTTCTCATTGGCAGAACGTCAACAAAACGTG
AAAAAATTATACATATAATTGATTTCGGTTTGGCCAAAGAATACATTGAT
TTAGATACAAATAGGCATATACCATATCGGGAGCATAAATCCCTAACTGG
AACGGCACGTTATATGTCAATCAACACGCACATGGGGCGTGAGCAGTCGC
GACGCGATGATCTGGAGGCATTGGGGCATATGTTTATGTATTTCTTAAGG
GGTTCACTGCCGTGGCAAGGCCTAAAGGCTGATACACTCAAGGAGAGATA
TCAAAAAATCGGTGATACGAAACGAGCACGCCCATCGAGGTGCTTTGTGA
TGGACATCCGGAAGAGTTTGCGACATATTTGCGTTATGTACGGCGGTTAG
ATTTTTTCGAACCCCCGACTATGATTTCTGCGAGACTGTTTCAGACTATT
CGATCGTAGGATCACGACGAGGGCGAGTTCGACTGGACAGGAGACAATGT
CACGCGTCGATCCTTGCAACTGGCAATGAGTCATCAATCACAAATAAGAT
CGCAATGTTACGCAAAACAATGCCAAGGAGGTGTGGCTGCTGGCCCGATG
TGCCA
UFO10551.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RE | 3212 | CG6963-RE | 1319..2498 | 5..1155 | 5080 | 96.8 | Plus |
| gish-RA | 2677 | CG6963-RA | 464..1614 | 34..1155 | 4950 | 96.8 | Plus |
| gish-RM | 5623 | CG6963-RM | 1319..2513 | 5..1155 | 4165 | 91.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16296835..16297107 | 621..892 | 1315 | 99.6 | Plus |
| 3R | 32079331 | 3R | 16289629..16289840 | 33..244 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 16295668..16295820 | 354..506 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 16296662..16296776 | 507..621 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 16292722..16292834 | 242..354 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 16297173..16297335 | 888..1041 | 395 | 91.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:10 has no hits.
UFO10551.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:21 Download gff for
UFO10551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1308..2379 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:01 Download gff for
UFO10551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1314..2385 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:07 Download gff for
UFO10551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1314..2385 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:07 Download gff for
UFO10551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16275135..16275169 | 1..34 | 91 | -> | Plus |
| 3R | 16289631..16289839 | 35..243 | 100 | -> | Plus |
| 3R | 16292724..16292834 | 244..354 | 100 | -> | Plus |
| 3R | 16295669..16295820 | 355..506 | 100 | -> | Plus |
| 3R | 16296662..16296776 | 507..621 | 100 | -> | Plus |
| 3R | 16296836..16297104 | 622..889 | 99 | -> | Plus |
| 3R | 16297175..16297349 | 890..1052 | 92 | -> | Plus |
| 3R | 16431609..16431625 | 1053..1069 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:01 Download gff for
UFO10551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12121391..12121542 | 355..506 | 100 | -> | Plus |
| arm_3R | 12122384..12122498 | 507..621 | 100 | -> | Plus |
| arm_3R | 12122558..12122826 | 622..889 | 99 | -> | Plus |
| arm_3R | 12122897..12123071 | 890..1052 | 92 | -> | Plus |
| arm_3R | 12257331..12257347 | 1053..1069 | 94 | | Plus |
| arm_3R | 12100857..12100891 | 1..34 | 91 | -> | Plus |
| arm_3R | 12115353..12115561 | 35..243 | 100 | -> | Plus |
| arm_3R | 12118446..12118556 | 244..354 | 100 | -> | Plus |
