UFO10553.5prime Sequence
1006 bp (996 high quality bases) assembled on 2012-01-06
> UFO10553.5prime
CAGTCGACATGAACAAGTACGGGATGGTCGGCGTCTGCCTACTGGCTGCT
CTGGGCGCTCTGCTCCTGGAGGTCACTGCCTCTCCTTCGTCCGCCGCCTC
GTCTAAGGTGGATCCTAGCCAACTTGGCGGACTTTCAGCTCAGTTCTTGC
CACCCGAGTACCGCAACACGAACGTTAGCATCGAGGATATAAAAAGAATA
TATCGTGAAAAATGCAAGAAGGTAAATGGAGCGGACAACGCAACCTTCTA
CGAAGAAATCGAGCGGGCGGCAGCCAAGATGAGCACCTGCATCAGCGGGG
TGGTCAATCTGACGGCTCTGCAGGAGGAGATGGATGTGGCGAGGCCGAAC
GGCGACTTGGACACCGTGTTTAGCAAATACTGTCTCAAGGCACCGGAGGC
AGAGGCCTGCGTCAAGGAGTTCAACGACAAGGCGCAGCATTGCTTGACCC
CCGAGGAGAAGCGCCACCAGGAGACGGTTACCCGAATTGGAGCGTCCGTT
TTGGGATTCGCCTGTTCGCGTGGCGGCGATCAGATTGCCCTCTTCATTGC
CGAGCAGGGACCCGAGTGCCTGGAGGCCAACAAGGAAGCCATTAGCAATT
GCCTCAATCAATCCTTTCATCAGTACATTCCCAAGGATGGCCAAGTTCCG
GACCTGATGAGCCGCCCAGAGCTCCTTTTCTCACCCACCCACTGCGTGGA
CCTGCAGCGCTTCGAGGCCTGTGTCATCCATCATTTGGAGCAGTGCACGC
AGATCACCACCGCTAATATCGTTCAGTCCGTCTTCCGTTTCGTGAAGAAC
GAGACCGACTGCCAGGCTTGGATGCAGGCACGTGCGACGAGAAGCTCATT
CTGATGGGCGCCTCAAGCAACAACACAGCCCCTGACTCGCCTACTCCCTG
GCCGGCACTCTTTTGGCGCCACCATACTCCTGATACTTCCCGGAAGCTTT
CTAGACCATTCGTTTGGCGCCGCGGGCCCAGGTAAGTGTTCATAATCATA
TATCAT
UFO10553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11378-RC | 2256 | CG11378-RC | 99..1039 | 8..945 | 4540 | 99 | Plus |
| CG11378-RB | 1698 | CG11378-RB | 598..1538 | 8..945 | 4540 | 99 | Plus |
| CG11378-RA | 1199 | CG11378-RA | 99..1039 | 8..945 | 4540 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1171815..1172580 | 183..945 | 3590 | 98.8 | Plus |
| X | 23542271 | X | 1171523..1171698 | 8..183 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:26 has no hits.
UFO10553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:23 Download gff for
UFO10553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11378-RA | 86..1035 | 1..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:09 Download gff for
UFO10553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11378-RA | 90..1039 | 1..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:14 Download gff for
UFO10553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11378-RA | 90..1039 | 1..945 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:14 Download gff for
UFO10553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1171514..1171698 | 1..183 | 97 | -> | Plus |
| X | 1171816..1172580 | 184..945 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:09 Download gff for
UFO10553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1065547..1065731 | 1..183 | 97 | -> | Plus |
| arm_X | 1065849..1066613 | 184..945 | 98 | | Plus |
