UFO10554.5prime Sequence
1166 bp (1043 high quality bases) assembled on 2012-01-06
> UFO10554.5prime
CAGTCGACATGCGCGTCTACCTGGCCCTGCCGCTCCTGCTGCTGGGCATC
GGCCTCAGTTTGGCCCAGTACCAGTATCAAGCGCCCCACCAAACCCTCGC
CCAGCAATTCGCCGACGTGGTGGATGTGGTCGATCCTGCAGAACAATCTA
TCAAAGCAGTGCGACCACCGAAGAGCCGCAATCAGTGCACCGCCAAGCAG
AACTGCTTCTGCGGCACTCCGAATGTCAACCGTATCGTGGGCGGCCAGCA
GGTGCGCTCCAACAAGTATCCTTGGACCGCCCAATTGGTAAAGGGTCGTC
ATTATCCCCGCCTCTTCTGCGGCGGTTCCCTAATCAATGATCGCTATGTG
CTGACCGCCGCCCATTGTGTGCATGGGAACAGGGATCAGATCACCATTCG
CCTGCTCCAGATCGACAGATCCTCCCGGGATCCCGGCATTGTGCGCAAGG
TCGTCCAGACCACTGTGCATCCTAACTACGATCCCAACCGGATTGTCAAC
GATGTGGCGCTGCTCAAGCTGGAGTCCCCTGTTCCACTGACTGGAAACAT
GCGTCCAGTCTGTCTGCCCGAGGCCAATCATAACTTTGATGGCAAGACCG
CTGTGGTTGCTGGCTGGGGTTTGATCAAGGAGGGCGGCGTCACCTCCAAC
TATCTGCAGGAGGTCAATGTGCCCGTCATCACCAACGCGCAGTGTCGCCA
GACGCGCTACAAGGACAAGATTGCCGAGGTGATGCTCTGCGCCGGATTGG
TGCAGCAGGGTGGCAAGGACGCCTGCCAGGGCGACAGTGGTGGCCCACTG
ATCGTCAACGAGGGTCGCTACAAGCTGGCCGGCGTGGTGTCTTCGGCTAC
GGATGTGCACAGAAAATGCGCCGGGTGTCTACGCCAGGGTGAGCAAGTCC
TGGACTGGATCCGTAGAACACCGCCGACGGCTGCTACTGCAGAGTGCAAG
CTTCTAAACCATTCGTTTGGCGCGCGGGTCCAGGTAATTTGTCATAATCA
TAATCTTAAATCATATCATATTCACAACTAGCCTAGGAGATCTGGTATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCGGCGCCACTGACGTCTG
AACAATTCAGATGGATTTTTGAGTATACTGGGATTATCAAGGGTCCAGCT
AACCCGATATCTAAAT
UFO10554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3355-RA | 1096 | CG3355-RA | 36..977 | 9..945 | 4585 | 99.5 | Plus |
| CG3355-RB | 1399 | CG3355-RB | 88..679 | 9..600 | 2960 | 100 | Plus |
| CG3355-RB | 1399 | CG3355-RB | 945..1295 | 600..945 | 1630 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4651765..4652157 | 208..600 | 1965 | 100 | Plus |
| 2L | 23513712 | 2L | 4652423..4652767 | 600..940 | 1525 | 98.8 | Plus |
| 2L | 23513712 | 2L | 4651490..4651688 | 9..207 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:34 has no hits.
UFO10554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:23 Download gff for
UFO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RA | 80..1029 | 1..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:13 Download gff for
UFO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RA | 28..977 | 1..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:17 Download gff for
UFO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RA | 28..977 | 1..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:17 Download gff for
UFO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4652423..4652773 | 600..945 | 98 | == | Plus |
| 2L | 4651482..4651688 | 1..207 | 98 | -> | Plus |
| 2L | 4651765..4652156 | 208..599 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:13 Download gff for
UFO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4652423..4652773 | 600..945 | 98 | == | Plus |
| arm_2L | 4651482..4651688 | 1..207 | 98 | -> | Plus |
| arm_2L | 4651765..4652156 | 208..599 | 100 | -> | Plus |
