UFO10555.5prime Sequence
983 bp (969 high quality bases) assembled on 2012-01-06
> UFO10555.5prime
CAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGCAGTAGCAGCT
CTGCTGCTTTTGGAGGCGATTCCCGCGGATGCAAAGCGGCGCAAGCACAA
GGGCTCCGATCATCACTATGAAAAGTCTGATCCCCACAAGACCAAGACAA
AGACCAAGTGGTCTAGCTCCACGGATTTGGCTGGAAACACTCCAATTTCC
ACCGAAGAGCACGGCTACTATGTAAAGCGCACCTTTGCGGCTCCCGGTGA
GATTGGAGCCGCACAGAAGCGTCTAAGTCCCCCCTATTTGGCCATTCCCA
TCGCCTGGTTCAGCTGTGAGTCGGGCCAGAAGAATTGCCAGTCTTCCAAT
TCCGCGGCTATCAACAGTGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTG
CGACGATGATTGCGATGAACTGTACGAGCCCATCTGCGGCAGGACCACCT
CAGAGGTGGCCGTTTTCTACAACAAGTGCAAGTTGGGTGTAGCCAAGTGC
CGATCCCACGGTCTTTGGACGGACTTCGCCTATGCCGAGTGCCAGGCGAA
ATATCCGCAGGAAACTGCCTATGCCGACAAGAAGTTCCGGTCATCGCCTT
ATTTCCGGGATGCGGCCATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAG
CGTAAGCAGGAGGAGGAACAACACAAGCTGGAGAAGGAGCAAAAGAAGAA
GAGAAAGCTGAGAAAAATAAGAACGAGAAAGACAGCAGCGAAAGCAGCGA
GGAGAAAGATGACCAAAAGGAAACAAGCAGATGATCCTCTTTCCCTAATG
CCACAGAAGAAAGTGAATCCACCCCAGAAGCCAGTGCCAGTCCTATTCAA
GTAGCAGTTCCAAACCAGTTTCAGTTTTGGAGCCTGCAAAGACGACCGAG
ACATCGCTATGCCGCCTATGCACTGAGGACACTCCACGCCAAACCTCTGG
AGAACCCCGCCCCTTCACAGCAGAACCAACCCA
UFO10555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ImpL1-RA | 1160 | CG10717-RA | 39..1025 | 7..983 | 4475 | 97.8 | Plus |
| ImpL1-RC | 1157 | CG10717-RC | 39..1022 | 7..983 | 4420 | 97.5 | Plus |
| ImpL1-RB | 1230 | CG10717-RB | 139..1095 | 37..983 | 4325 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13382908..13383798 | 37..921 | 4005 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:42 has no hits.
UFO10555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:24 Download gff for
UFO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RA | 40..1032 | 1..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:16 Download gff for
UFO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RA | 32..1024 | 1..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:21 Download gff for
UFO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RA | 32..1024 | 1..982 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:21 Download gff for
UFO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13382796..13382835 | 1..39 | 95 | -> | Plus |
| 3L | 13382911..13383863 | 40..982 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:16 Download gff for
UFO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13375896..13375935 | 1..39 | 95 | -> | Plus |
| arm_3L | 13376011..13376963 | 40..982 | 97 | | Plus |
