UFO10556.5prime Sequence
1147 bp (1047 high quality bases) assembled on 2012-01-06
> UFO10556.5prime
CAGTCGACATGTTGCACTCAACTTTGATTTGTGCCACGCTCCAAGCGCAG
TTACTGCGCAAGGCCAGCCGCAAGTACGAGGACGCGGAGGGCAAGCGAAA
GAATAGCAACTCGGACAAGGAGGATGCCAGCGAACAGGCGCTTATCCATG
GCCGCAACTCCATTTCCACGGCGGCAGGTTCCACCACGGACATGCAGCAT
CGCCAGCGGAAACAGCGCAATCATCTCAATAACAATAATAGTAAGCAAAA
TAGCTGTGATAAAACTGGCAACGATGACGACGACCGGGATCAGCACGAAT
CGGAGGTGTTCCTCAAGGAGGGCGGCCGCATTGTCGAGCAGCTCAAGTTA
AAGACCTTCCCCAGCAGCCCGGCCCACTCGGCGGCCTCATCGAACCAGAC
CGAACAAACCAACTCTATTGCCGCCTCCACCGCCACCGTAGATGTCCAGC
TGGCTGGCCATCCCACCGACCCGTCCGTAGGTGGCGCCTCGGAGCCACGT
GCTCCGCTGGCCGGACACGATAGCATGCACAGTCTCAATGGCAGCCTAAA
CGGAGAATCCGGACCGGTGAATGGCGCTCTCAAAGCACGGCTGGATCGTG
ATGTGAACGCGGCGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCA
CAGAAACGGGGTGCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTT
CACAATGACGTTCCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCA
TTATTCTCGCCGCTAGCAAGGACGTTTACGGCGTTATCGCTGGCGGTATT
ATTGGCCACTGCATCTGCACCGGCCTGGCTGTGATTGGTGGTCGTCTCGT
GCTTCCAAAATCTCAGTGCGCACTGTCACATTGTGGGTGGCATTGTGTTC
ATCGGATTCGCCATCTACGCTGTCGCATACCTCCGGATGACATTGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCTA
ATTATATCTAATATAATCACAACTAGCCTAGAGATTCTTGTCATGACTAG
TGCTGATTCTCACATAAAAAACGCCCGGCGGCAACCGGAGCGTTCTGAAC
AAATTCGAAGTGGATTCTGAGGTCTTAATGGATTCTATTCACACTGA
UFO10556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RG | 1550 | CG42542-RG | 81..1019 | 9..944 | 4620 | 99.7 | Plus |
| CG42542-RD | 2215 | CG42542-RD | 782..1680 | 49..944 | 4420 | 99.7 | Plus |
| CG42542-RE | 2190 | CG42542-RE | 757..1655 | 49..944 | 4420 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15200644..15201225 | 9..590 | 2910 | 100 | Plus |
| 3R | 32079331 | 3R | 15202023..15202204 | 590..771 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 15202264..15202442 | 769..944 | 745 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:50 has no hits.
UFO10556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:25 Download gff for
UFO10556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RG | 81..1024 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:19 Download gff for
UFO10556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RG | 81..1024 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:24 Download gff for
UFO10556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RG | 81..1024 | 9..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:24 Download gff for
UFO10556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15202266..15202442 | 771..944 | 98 | == | Plus |
| 3R | 15200644..15201225 | 9..590 | 100 | -> | Plus |
| 3R | 15202024..15202203 | 591..770 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:19 Download gff for
UFO10556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11027988..11028164 | 771..944 | 98 | == | Plus |
| arm_3R | 11026366..11026947 | 9..590 | 100 | -> | Plus |
| arm_3R | 11027746..11027925 | 591..770 | 100 | -> | Plus |
