UFO10557.5prime Sequence
1123 bp (1038 high quality bases) assembled on 2012-01-06
> UFO10557.5prime
CAGTCGACATGAAAAAAATAATTAATACATCAAAGCCAAAGCGCAAGTCC
ACTTCCATGAAAGTGGAGGAGACTAAGCTAGACGAGGCGCGCTGGGGTAA
GCCGCAGACAAAGGAAGGTGAGTCTGCAAATGGGATAGCAAATCCCTCAA
ATGACGATAAAAAGGAGCTGGCCAATTTCAAAGCCACCTTCAATTCCTGG
GCCCCCGAGAAGAAACGCGAGAAGATGCACAAGGTAGGCGTCATCTTAAT
ATCCAACATACCCAAGGACATGGACGGGGACTGCCTGAAGGAAATCATGA
ACTTGCACAGCGTCGTCGGCAGAGTTTACGTGCAGCCGGAAACGCTGTCA
AGTTTCAAGACAAAGAAGAACATGCGTAAGGGCTGGGTGGAGTTCATTTC
GAAAAGTGGGGCCAAAAAAATCGCTCTAGAGCTGAACAATAAGCCTATAA
CCGATGGCAAGTCGTCCCGATTCCGTGGCTTGCTGTGGAAAATGAAGTTC
CTGCCACGCTTCAAGTGGTACTATCTAACCGATCGCATGGACTACGAGCT
GGCGGTTTGCAAAGTTCGCGTATGGTCGCAGGCCCGCAAGCGGGCCACCT
TCTGGTACGATCCCGACCAGATGGAGTATTTCAAGAAGCAAGTGAAGAAG
ATGAAGAAGATGAAGAATGTCAAGGAAGCGGAGATGGCTACCAGGAATGC
GGAGATGGCTGCCAAGAAAGCGGAGATGGCTGCCAAGAAATTGAAGAAGT
CTGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGTTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGACAATCCAAGATGGAGTTCTGAGGTCATTACTG
GATCATCACAGGAGTCCAGCGAGCTCGATATCAATTACGCCCCCGCCTGC
CACTCATCCGCAGTACTGTTGTAATTCATTAGCATTCTGGCGACATGAAG
CCATTCCAACGGATGATGGACCTGATTCGCCAGCGGCTCACACTTGGTCG
CCTTGCGTATAAAATTGCCCATG
UFO10557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6999-RA | 875 | CG6999-RA | 57..803 | 9..755 | 3720 | 99.9 | Plus |
| CG32706-RA | 872 | CG32706-RA | 68..805 | 9..755 | 3485 | 97.9 | Plus |
| CG32708-RA | 855 | CG32708-RA | 54..617 | 9..557 | 685 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9088839..9089242 | 352..755 | 2005 | 99.8 | Plus |
| X | 23542271 | X | 9087612..9088006 | 352..755 | 1820 | 97.3 | Plus |
| X | 23542271 | X | 9088423..9088767 | 9..353 | 1725 | 100 | Plus |
| X | 23542271 | X | 9087196..9087540 | 9..353 | 1650 | 98.6 | Plus |
| X | 23542271 | X | 9085985..9086320 | 9..353 | 470 | 77 | Plus |
| X | 23542271 | X | 9086448..9086626 | 379..557 | 355 | 79.9 | Plus |
| X | 23542271 | X | 22143179..22143299 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22147910..22148030 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22152963..22153083 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22158008..22158128 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22167776..22167896 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22187491..22187611 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22192394..22192514 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22197295..22197415 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22202304..22202424 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22212449..22212569 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22217500..22217620 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22226694..22226814 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22231691..22231811 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22236686..22236806 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22241693..22241813 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22246721..22246841 | 98..215 | 195 | 79.3 | Plus |
| X | 23542271 | X | 22251703..22251823 | 98..215 | 195 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:00 has no hits.
UFO10557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:25 Download gff for
UFO10557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6999-RA | 49..809 | 1..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:24 Download gff for
UFO10557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6999-RA | 49..809 | 1..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:28 Download gff for
UFO10557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6999-RA | 49..809 | 1..763 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:28 Download gff for
UFO10557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9088415..9088765 | 1..351 | 98 | -> | Plus |
| X | 9088839..9089248 | 352..763 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:24 Download gff for
UFO10557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8982448..8982798 | 1..351 | 98 | -> | Plus |
| arm_X | 8982872..8983281 | 352..763 | 98 | == | Plus |
