UFO10558.5prime Sequence
995 bp (994 high quality bases) assembled on 2012-01-06
> UFO10558.5prime
CAGTCGACATGTGGAGTCCGACGCACTGTAGTGTAACGGTGCAGCGAGCG
CGTGGGCTGCTCACCAAGGGCAAGAATGGCACCAACAACTGCTTCGTCAC
CATTGCTCTGGGCAAGGAGAAGTACCAGACGTCCGTCAAGGACAAGGCCG
AGACGAGCGTCAACTGGAACGAGGAGTGCGAACTGAAAATTCCCGATCAG
GGTAATCGCGCCGAGCTCACTTTGACCTGCCTGCACAGGAACAATCTGGG
CATCGATGAGTTCCTCGGCCAGGCGACGCTGCCGCTCAACGAGATGGATG
TGTATGACCGGCCACGCGCCAAGTGGTTCAAGCTGGAGAGCAAGCCCGGC
AAGGAGAAGAAGAACAAGGAGCGGGGCGAGCTGGAGGTGCGCATCGCCTT
CGTGGTCAAGTCCGGCTCGCTGACCGATCTCAGCAAGAAGGACAAGCACA
AGTCTTCCATTGGCCAGCTGGCCAGCTCCGTGGGTGGCAGTCTGTTGTCC
ATCGGCAACGGCGAGAAGCGGCGAGGCATCAAGAAGCTGGCTGGCTCGCT
TAGCTCTAAGCTGCACATCCGTAGCAAGAAGAAGAACCAGGAGGCGGGCG
CCGACGATAGTAGCTCCTTCGGCGGCTCCTTCGCCAGCCTGCGCACGCCC
AACAGCTCCAACGGCAGGGGCCAGAATGGTGGCAGTGGCAGGCGACGTGG
CGGCCAGCGGGCGGGCGAAGCCGATCCCGGCGTGATCAGCGAGGACGAGG
ACGAGTTTGTGTTCGACAACCTCTCGCACAAGAGCTCCCGGCAGCTCACT
TAACATCCAACGCATCGGCCTGCAGCCGCCGCAGTCGGTACGCCCAACTT
TACGCCGCGCCACCCATCGCCCCTGCTGAACACGGAGTTAGTGGCGTCGG
AAGCGGCAGCGCGAAAGATAAATACAACACGACACGACAGCACCTCGCCC
AGTCCCAGTCTACGGAACGCATCATAATTGGTCACGAGAAGCTGG
UFO10558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rip11-RB | 2329 | CG6606-RB | 426..1415 | 6..991 | 4760 | 99.1 | Plus |
| Rip11-RC | 2508 | CG6606-RC | 345..1334 | 6..991 | 4760 | 99.1 | Plus |
| Rip11-RE | 3466 | CG6606-RE | 345..1261 | 6..921 | 4485 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18639460..18640197 | 921..185 | 3515 | 99.3 | Minus |
| X | 23542271 | X | 18640258..18640411 | 192..39 | 740 | 98.7 | Minus |
| X | 23542271 | X | 18637710..18637768 | 991..934 | 215 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:37 has no hits.
UFO10558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:19 Download gff for
UFO10558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RB | 335..1333 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:45 Download gff for
UFO10558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RC | 339..1337 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:51 Download gff for
UFO10558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RC | 339..1337 | 1..995 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:51 Download gff for
UFO10558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18637705..18637786 | 918..995 | 91 | <- | Minus |
| X | 18639464..18640197 | 185..917 | 99 | <- | Minus |
| X | 18640266..18640410 | 40..184 | 100 | <- | Minus |
| X | 18647190..18647225 | 1..39 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:45 Download gff for
UFO10558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18531738..18531819 | 918..995 | 91 | <- | Minus |
| arm_X | 18533497..18534230 | 185..917 | 99 | <- | Minus |
| arm_X | 18534299..18534443 | 40..184 | 100 | <- | Minus |
| arm_X | 18541223..18541258 | 1..39 | 92 | | Minus |
