UFO10560.5prime Sequence
1013 bp (1012 high quality bases) assembled on 2012-01-06
> UFO10560.5prime
CAGTCGACATGGCCAGTCGCCAAGCCGGTTTCGTCCTAGACGCCAAGTCC
ATGGGTCTGAATCCGTCGAGACCTGCATCATCGCCACCGCCACCACCATC
ATCTGCCAGTCAAATGTGTCGGCAAGTGCAGCCAACCGGAACGAGTGCCT
CGCATCCACATCAAGAATCGACGCTAAAAGCCTCATCTCCTGATCGGTGC
ACTGCCAGCACCGAGGCGATGTCCACCGAACATTACCGCTGTCTGATCCA
GAAGCTGCGGGATACCAACGGCGATGCTGGCGATATGAGCTTTGAGCTGA
ACAGCATATTTCTGAAGCGGCTGGACGAGATTGACTGCCTAGATGAGCAC
GAGGGTGATGACATGCACACTTGCCAGTTGCGTCTGGTCACTTTTCAGGA
GTGGGTGGATTTCCTGCTCCACGTGAACAGCGTGATCCTGGGCAACGTGT
CGGACTTGGAGAAGGAGGCGTACAGCAAGATCGTTGCCTGCTGTCAGTCT
GTCCAAGTGCGACAACAGCATACCCTCGAGGAGAATCGTAGGCTGCGTGA
GGACATTTGTGCGATCATAGAACGCGTGCAGCATTCTCCTCACTGCACCG
ACTTTGATTTCAATGGCATTTCCCTAGAGACACTGACCGTTAATCAATTG
CGGGGCGTGGGAAAGGATCCCGCCCACGCGGAATGCGAGAGCGAGAAGGT
AGGCCATAGATCCTTGAAGGGAAAAGGCGGCGGTGATTCCAATGTCAAGT
GGGACCCGAAGTCGTCCCACAAGCGCGAGAACTCTAAAGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCCGGCGGCACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAACCTAGCTCG
UFO10560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yuri-RI | 956 | CG31732-RI | 101..881 | 8..788 | 3905 | 100 | Plus |
| yuri-RQ | 3658 | CG31732-RQ | 566..1256 | 8..698 | 3455 | 100 | Plus |
| yuri-RC | 2555 | CG31732-RC | 566..1256 | 8..698 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15263242..15263665 | 788..365 | 2120 | 100 | Minus |
| 2L | 23513712 | 2L | 15263770..15264127 | 365..8 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:53 has no hits.
UFO10560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:20 Download gff for
UFO10560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RI | 101..881 | 8..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:54 Download gff for
UFO10560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RI | 101..881 | 8..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:00 Download gff for
UFO10560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RI | 101..881 | 8..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:00 Download gff for
UFO10560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15263242..15263664 | 366..788 | 100 | <- | Minus |
| 2L | 15263770..15264127 | 8..365 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:54 Download gff for
UFO10560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15263242..15263664 | 366..788 | 100 | <- | Minus |
| arm_2L | 15263770..15264127 | 8..365 | 100 | | Minus |
