UFO10561.5prime Sequence
1129 bp (1046 high quality bases) assembled on 2012-01-06
> UFO10561.5prime
CAGTCGACATGCGTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAAT
CGCCGCAGCGGCAGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGG
AGGCGGACTTCGGCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTG
CCGCCGAGCGCGTTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGA
GGACGTTCCCGCTCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGT
GGACAGAGCACGTTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGA
GCCGCAATCGCGATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGG
CTTTCAGTCAAGCACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCA
GGCCAAGATCCCACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGG
CAGGCGGACGGGTCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAG
GGAGTTTCCGCCTCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATC
TGTTGCAAGAAACGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTT
CTGCTCGTCGCTCACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCC
GCTATCGCCGCTACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGG
ACGCAGTGCAGGCGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTG
ACAAAAACGCGAAGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCAG
CAACAGGTTCGACGGGGACGCAGTCGTAGTCGTAAGCCTACAGGTAAAAG
CGAGACAAGTGGCCAGGAGACAAACCGGACTGGATCTGGAAATAGGCACT
TGAAACTCAAAATTGACATATTTTTGTCTCTACTTTCTACTTACACTCTT
GATGCAAGCTTTCTAGACCATTCGTTTGGCCGCGCGGGCCCAGGTTAGTG
GTTCATAATCATATTCATATATAATCATATCACAACTAGCCTAGGGAGAA
TCTGGGTCCATGACTGTTGCTTGGATTCTCCCAATAAAAAACGCCGGCGC
AACGAGCCGTTCTCTATACAATCTAGGAT
UFO10561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-RD | 2400 | CG9775-RD | 1032..1976 | 9..953 | 4725 | 100 | Plus |
| CG9775-RE | 1966 | CG9775-RE | 732..1571 | 9..848 | 4185 | 99.9 | Plus |
| CG9775-RC | 1740 | CG9775-RC | 506..1345 | 9..848 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4639018..4639556 | 547..9 | 2695 | 100 | Minus |
| 3R | 32079331 | 3R | 4638434..4638841 | 953..546 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:48 has no hits.
UFO10561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:49 Download gff for
UFO10561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RD | 1044..1995 | 1..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:54 Download gff for
UFO10561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RD | 1028..1979 | 1..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:28 Download gff for
UFO10561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RD | 1028..1979 | 1..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:28 Download gff for
UFO10561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4638434..4638839 | 548..953 | 100 | <- | Minus |
| 3R | 4639018..4639560 | 1..547 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:54 Download gff for
UFO10561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 464156..464561 | 548..953 | 100 | <- | Minus |
| arm_3R | 464740..465282 | 1..547 | 99 | | Minus |
