UFO10563.5prime Sequence
964 bp (935 high quality bases) assembled on 2012-01-06
> UFO10563.5prime
CAGTCGACATGCAGCTCCTGGTCGTGGCCCTGGTGGCGGTGGCCATCGCG
TCCTTGCCCCAACTGGCCGCAGGTAAAAAGCTGGGGAAGCGCTGCGTGAA
CTGCACGTACCGCACTTACTACACCTACGGCGATGGGCGATCCCTGCAGC
GGGTTGTCTATAGAGATCCGGTCTACACACGTGCGCAGTCCTACGCGAGC
GGATGCAGCGGTAGCCCGTGCGGCGTGAACGCCGTGTGCCAGGAGGCCTC
CGGAGGACGGCCCGTCTGCTCGTGCCCGCCCGGATTCAGCGGTAATCCGC
TCACCCACTGCAATCGCGGCGAGTGCCTGGACAACGTCGACTGTCGCGAC
AACCTGCAGTGCAAGGACAATCGCTGCGTTAATCCCTGCGTGGGTGCCTG
TGGCATTGGCTCCAATTGTGACGCCCGCAACCACGTGGCCGTGTGCAGCT
GCCCCGCCGGCTACAATGGCGACCCATACCACGCCTGCCACCTCAACGAT
CCGGAGGAGCAGTGCCATCCCAGTCCGTGCGGCGTTAACACCAAGTGCGA
GATCATCAACGGCGTGCCCACCTGCTCATGCGTTCACGGCTATGTGGGCA
ATCCGCTGAGCGGCTGTCGCCACGAGTGCGATCACGATGGCGACTGCAGC
AGCCGGGACATGTGCTCCAGCAACTTCAAGTGCGTGCCGGCATGCGGGCA
GTGCGGCACTGGCGCCACCTGCCGAACGGTCAGCAATCACCGGGCTGTCT
GCGAGTGCCCCAAGGGCTACATTGGCAGCCCGTACACGGAGTGCCGACCG
GAGTGCTATGGCGATGCCGACTGCCCGGCCGGGCGACCCGCCTGCTTCTA
CGGCATCTGCAAAACACCTGCGAGGGTGCCTGCGGCATCGCGCGACTGCA
CCTGCGCGGCTCACCCCGTCTGCAGCTGCTCCGCGACATGACCGCGATCC
CTTCGTGCGCTGCC
UFO10563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9572-RB | 1664 | CG9572-RB | 136..1099 | 9..964 | 4605 | 99.1 | Plus |
| CG9572-RA | 1667 | CG9572-RA | 141..1102 | 11..964 | 4595 | 99.1 | Plus |
| CG9572-RD | 1556 | CG9572-RD | 202..991 | 183..964 | 3735 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20154197..20154665 | 504..964 | 1935 | 97.7 | Plus |
| X | 23542271 | X | 20150597..20150837 | 183..423 | 1205 | 100 | Plus |
| X | 23542271 | X | 20150064..20150236 | 11..183 | 865 | 100 | Plus |
| X | 23542271 | X | 20150945..20151026 | 423..504 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:17 has no hits.
UFO10563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:27 Download gff for
UFO10563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RB | 134..1097 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:33 Download gff for
UFO10563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RB | 136..1099 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:35 Download gff for
UFO10563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RB | 136..1099 | 9..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:35 Download gff for
UFO10563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20150062..20150236 | 8..183 | 99 | -> | Plus |
| X | 20150598..20150836 | 184..422 | 100 | -> | Plus |
| X | 20150945..20151026 | 423..504 | 100 | -> | Plus |
| X | 20154198..20154665 | 505..964 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:33 Download gff for
UFO10563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20044095..20044269 | 8..183 | 99 | -> | Plus |
| arm_X | 20044631..20044869 | 184..422 | 100 | -> | Plus |
| arm_X | 20044978..20045059 | 423..504 | 100 | -> | Plus |
| arm_X | 20048231..20048698 | 505..964 | 98 | | Plus |
