UFO10564.5prime Sequence
1166 bp (1028 high quality bases) assembled on 2012-01-06
> UFO10564.5prime
CAGTCGACATGTCGCGGTTGTGCACTTCTTTGGTCATCATTTTGGGTCTC
ATCCTCTCGAGCGGTGGCACTCACATATGCCTGAGCTCCAATCTGTGTGT
TCCCAGGGAAAATTGTCGTGAAGAGATGCCGTTCTTCGACTTTAGTTCCA
CCATTGAGTGCTCCGACGAAGAAGTGTGCTGTGAAAAGTCAAATGTGATA
GGCATGAGTAAGAGTCCTCCACAACATTCAGTGGACACACTTCTTAGGAC
AAGTTATCCAAATGCCCTGGATGGAAGCCCTCAGGTGTTTGGTGACCAAA
CCAAACCGAATCAATTTCCCTGGGTGACGGCTTTGTTCGCCAAGGGATCT
TATCTGGGAGGAGGATCTCTGATTACCCCAGGACTTGTACTAACCGCTGC
CCACATCCTAGCGGGATTATCCCCCAATGACATCATGGTTAGAGCTGGCG
AATGGGATCTATCCTCCAGTGAGAAACTAAATCCACCGATGGATCGTCAA
GTGATCAAGATCATGGAGCATGAGGCCTTTAACTACAGCAGCGGAGCCAA
CGACTTGGCGCTTCTCTTCTTGGATTCGCCTTTTGAGTTGAGGGCCAACA
TCCAGACCATTCGCTTACCCATTCCGGACAAGACTTTCGATCGAAGGATA
TGCACGGTCGCAGGTTGGGGAATGAGATCGTCGACCGATGTTGATATTCA
GACCATCCAGCAGAAGGTCGATTTGCCCGTTGTCGAAAGTTCCAAATGCC
AGAGGCAGCTCAGACTAACTAAAATGGGCTCGAACTACCAGCTGCCCGCC
AGTTTAATGTGTGCCGGCGGTGAGGAGGGACGGGATGTCTGTTCTCTATT
CGGAGGATTCGCCCTTTTCTGCTCCCTGGACGATGATCCCAATCGCTACG
AGCAGCGGGCATCGTAAGCTTCGGCGTTGGATGCGGCCAGGCAAACGTTC
CGACCACCTTCACCCATGTGTCCAAGTTCATGGAAGGGATCAATCGCACT
TGAGCAAGTGCTTGCGGGCTGGAATTTGCTCTGCCATGTCAGCAGCTTCT
AAACATCGTTTGGCCGCGGTCAGGTAGTGGTCTAATCATAATCTAATCTA
AATCTAATCCAACTAGCTAAGAATTCTGGTCATGACTATGTGCTGAATTC
TCACACAATAAAAGTC
UFO10564.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3117-RB | 1217 | CG3117-RB | 16..1056 | 9..1041 | 4955 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2846140..2846939 | 995..197 | 3920 | 99.6 | Minus |
| 2L | 23513712 | 2L | 2847004..2847197 | 202..9 | 955 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:35:20 has no hits.
UFO10564.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:27 Download gff for
UFO10564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3117-RB | 1..1028 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:35 Download gff for
UFO10564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3117-RB | 11..1043 | 2..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:38 Download gff for
UFO10564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3117-RB | 11..1043 | 2..1030 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:38 Download gff for
UFO10564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2846151..2846938 | 198..984 | 99 | <- | Minus |
| 2L | 2847009..2847202 | 2..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:35 Download gff for
UFO10564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2846151..2846938 | 198..984 | 99 | <- | Minus |
| arm_2L | 2847009..2847202 | 2..197 | 97 | | Minus |
