UFO10565.5prime Sequence
898 bp (898 high quality bases) assembled on 2012-01-06
> UFO10565.5prime
CAGTCGACATGGAGGCAAATGGCGATACCAGCGCCTGCAATGGGTATTCG
GACAAGCAGCGGAAGGATGTGCGCGTCTGGTGCGATGGATGCTATGATAT
GGTACACTTCGGACATGCCAATTCTCTGCGACAAGCCAAGGCTCTTGGCG
ATAAGGTAATTGTGGGCATTCACACCGACGAGGAGATCACCAAGCACAAG
GGACCACCGGTCTTCACCGAGGAGGAGCGCGTCAAGATGGTCAAGGGCAT
CAAATGGGTGGATGAGGTGGTGCTCGGTGCTCCGTATGTGACCACACTGG
ATGTGCTCGACCAGAACAACTGTGATTTCTGTGTGCATGGAGATGACATT
ACAATGACAGCCGAAGGAGTGGACACATATCATTTGGTCAAATCAGCCAA
TCGCTACAAGGAAGTGAAACGCACAGCTGGAGTCTCGACCACTGACCTTG
TGGGCCGCATGTTGCTCCTGACACGCAACCACTTCCGTCAAGGATCCGCG
GAATATGATATCGAGAAAGAAGTGTCAATTTTAAAACGACAAATAAAATC
CCATCCAGGTTCTTCGAACATGGGTCAAGATTCGGCAGCCAAAAGTCCGT
GGACCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTC
AGTGATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGG
CGCCTTCGATCTCTTCCATGTGGGTCACCTGTACTTTCTGGAAAATGCTA
AGAAACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTG
AACTCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCAGGAGCGCGT
GCTCAGTGTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCAGAGCT
UFO10565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RB | 2210 | CG5547-RB | 429..1319 | 9..898 | 4370 | 99.4 | Plus |
| Pect-RE | 2144 | CG5547-RE | 429..942 | 9..522 | 2570 | 100 | Plus |
| Pect-RD | 2174 | CG5547-RD | 429..942 | 9..522 | 2570 | 100 | Plus |
| Pect-RE | 2144 | CG5547-RE | 941..1253 | 587..898 | 1480 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13208109..13208360 | 91..342 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 13209429..13209601 | 516..688 | 850 | 99.4 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 687..871 | 835 | 97.8 | Plus |
| 2L | 23513712 | 2L | 13208665..13208777 | 410..522 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 13204190..13204272 | 9..91 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 13208419..13208488 | 341..410 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:28 has no hits.
UFO10565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:28 Download gff for
UFO10565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 414..1313 | 1..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:40 Download gff for
UFO10565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 420..1319 | 1..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:41 Download gff for
UFO10565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 420..1319 | 1..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:41 Download gff for
UFO10565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13204181..13204272 | 1..91 | 96 | -> | Plus |
| 2L | 13208110..13208360 | 92..342 | 100 | -> | Plus |
| 2L | 13208421..13208487 | 343..409 | 100 | -> | Plus |
| 2L | 13208665..13208777 | 410..522 | 100 | -> | Plus |
| 2L | 13209436..13209599 | 523..686 | 100 | -> | Plus |
| 2L | 13209660..13209845 | 687..871 | 97 | -> | Plus |
| 2L | 13209911..13209937 | 872..898 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:40 Download gff for
UFO10565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13204181..13204272 | 1..91 | 96 | -> | Plus |
| arm_2L | 13208110..13208360 | 92..342 | 100 | -> | Plus |
| arm_2L | 13208421..13208487 | 343..409 | 100 | -> | Plus |
| arm_2L | 13208665..13208777 | 410..522 | 100 | -> | Plus |
| arm_2L | 13209436..13209599 | 523..686 | 100 | -> | Plus |
| arm_2L | 13209660..13209845 | 687..871 | 97 | -> | Plus |
| arm_2L | 13209911..13209937 | 872..898 | 96 | | Plus |
