UFO10566.5prime Sequence
1151 bp (1042 high quality bases) assembled on 2012-01-06
> UFO10566.5prime
CAGTCGACATGACGGAACGACAGCCGTTGCTCCTCCAGAGCGATGCCTCT
GACTACGAGGGCAGTCGAGGATCGGCAGCACGACCCGTGCGCAGCTCTCC
GCCGGACAACACTCTCGTCAACGTGCACAGCGAGGACAGCTTAGCAGCAG
CCTCTGGATCGGGAGATGATGAAATTGGATCGACGGATAAGTCCTATAAC
CCCACCCATCATCGCGACCTGGAGCATCCGACGTCCAACTTCGATACCCT
GGTTCATCTGCTGAAGGGCAACATTGGTACGGGCATTCTGGCAATGCCGG
ATGCCTTTAAGAACGCCGGACTTTATGTGGGACTCTTTGGCACAATGATC
ATGGGAGCCATCTGCACCCACTGCATGCACATGCTGGTCAACTGCTCCCA
CGAGCTGTGCCGGAGATTCCAGCAGCCATCGTTAGATTTCTCGGAGGTGG
CATACTGCAGTTTTGAGTCGGGACCTTTGGGACTAAGACGATACTCCATG
TTGGCTCGACGAATTGTTACCACGTTCTTGTTTATCACGCAAATCGGTTT
CTGCTGCGTCTACTTCCTCTTTGTGGCGTTGAATATCAAGGACGTTATGG
ATCACTACTACAAGATGCCTGTGCAGATTTACCTGCTTATAATGCTTGGA
CCCATGATCCTGTTGAATCTGGTGCGGAATCTGAAGTATTTGACACCCGT
TTCGCTGGTTGCCGCCCTGCTCACAGTTGCCGGACTGGCCATTACATTCT
CGTACATGCTGGTGGATCTGCCGGATGTGCACACGGTCAAGCCGGTGGCC
ACTTGGGCGACGTTGCCTCTATATTTTGGAACCGCCATCTACGCGTTCGA
GGGAATTGGTGTTGTCCTGCCCTTGGAGAACAATATGCGCACACCCGAGG
ACTTTGGCGGCACCACAGGTGTCCTCACACGGGCATGGTGATCGTGGCCT
GCTTGTACACAGCTGTCGGGTTCTCGGCTACTGAGTACGGCGAACAGTGG
AGGCAGCATTACCCTAATCTGGCCGCCAGGCGACCCACTTTCCCAGTTGG
TGCGGATTCATGGCGGTGGCCATTTTCCTCTCGTATACGCTTCATTTTAG
TGGCTGTGACCCGTGGAACCTTTGTGGGCGAGTTCATTTCAATCACAGAG
A
UFO10566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-RI | 2510 | CG13384-RI | 390..1532 | 9..1140 | 5180 | 97.6 | Plus |
| CG13384-RH | 2560 | CG13384-RH | 440..1582 | 9..1140 | 5180 | 97.6 | Plus |
| CG13384-RF | 2534 | CG13384-RF | 414..1556 | 9..1140 | 5180 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8386480..8387311 | 144..974 | 4095 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8386247..8386385 | 9..147 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 8387659..8387722 | 1037..1098 | 210 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:40 has no hits.
UFO10566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:29 Download gff for
UFO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RD | 549..1659 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:46 Download gff for
UFO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RF | 414..1524 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:44 Download gff for
UFO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RF | 414..1524 | 9..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:44 Download gff for
UFO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8386247..8386385 | 9..147 | 100 | -> | Plus |
| 2L | 8386484..8387378 | 148..1036 | 98 | -> | Plus |
| 2L | 8387659..8387735 | 1037..1109 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:46 Download gff for
UFO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8386247..8386385 | 9..147 | 100 | -> | Plus |
| arm_2L | 8386484..8387378 | 148..1036 | 98 | -> | Plus |
| arm_2L | 8387659..8387735 | 1037..1109 | 92 | | Plus |
