UFO10568.5prime Sequence
1140 bp (1031 high quality bases) assembled on 2012-01-06
> UFO10568.5prime
CAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGTACCATGCC
GTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTGGACGAGGG
CGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCGCAACAAGT
TGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCGATGGCTCC
CATCCGCCACCCATCGTGGCCAACAATCCAAAGGCAGCGAATGCCAAGGC
CAAGAAGGCCGCCGCCGCAACCGCGGTCACATCACACCAACATATCGGCG
GCAACAGCTCCATGTCCTCGCTGGTGGGGCTTAAGTCGTCCGCTGGAATG
GCCGCCGGCAGCGGCATAAGGAACGGGCTGGTGCCCATCAAGCAGGAAGT
CAACTCACAGAATCCACCGCCACTGCATCCTACCTCGGCTGCAAGCATGA
TGCAGAAACAGCAGCAGGCGGCGAGCAGTGGACAGGGTTCCATTCCAATT
GTGGCCACGCTGGACCCCAATCGCATTATGCCTGTTAACATCACGCTGCC
ATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCGAGTGCTCACCATACAAG
TGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGACCCAAATTCTGACGGCC
CACCTGATTTCATCCATCATGTCCTTGCCCACCACGTTGGCCTCGTCTGT
GCTTCAGCAGCACGTAAACGCAGCGCTAAGCAGCGCCAATCACCAGAAAA
CTCTTGCCGCCGCCAAGCAATTGGACGGTGCCCTGGGACTCCTCCGATGA
GGATGAAAGCGAGGAGAGCGACGACAACATCGACAACGATGACGACGATG
ACCTAGACAAGGACGATGACGAGGATGCGGAGCACGAGGATGCTGCCGAG
GAGGAGCCGCTCAACAGCGGAGACGATGTCACCGACGAGACTCTGCGAAA
TGTTGACACAGATAACGTTGATTGTTTTCAGTACGATAGATCACCAGTCG
CGAACAATGGAAATTTATCTCAAGATGGCATCATGAACATGGCGGGGCAG
GACTACTGTTCGAAATTCGAATGGGCGACGCAGAGTGGGCAGCTTTTCTA
AGACCATTCGTTTGGGGCGGCGGGGACCAAGGTAAGGTGT
UFO10568.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RB | 1586 | CG5930-RB | 173..1261 | 9..1088 | 4980 | 98.1 | Plus |
TfIIA-L-RA | 1595 | CG5930-RA | 173..1270 | 9..1088 | 4880 | 97.3 | Plus |
TfIIA-L-RC | 1440 | CG5930-RC | 50..1115 | 32..1088 | 4865 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27255088..27255395 | 232..539 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 27255456..27255663 | 540..747 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 27254527..27254729 | 32..234 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 27255726..27255968 | 748..988 | 915 | 95.5 | Plus |
Blast to na_te.dros performed 2014-11-27 20:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5734..5805 | 796..870 | 115 | 65.3 | Plus |
UFO10568.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:30 Download gff for
UFO10568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RB | 164..1241 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:54 Download gff for
UFO10568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RB | 164..1241 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:50 Download gff for
UFO10568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RB | 164..1241 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:50 Download gff for
UFO10568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27254528..27254728 | 33..233 | 100 | -> | Plus |
3R | 27255090..27255395 | 234..539 | 100 | -> | Plus |
3R | 27255456..27255663 | 540..747 | 100 | -> | Plus |
3R | 27255726..27255970 | 748..989 | 96 | -> | Plus |
3R | 27256034..27256090 | 990..1041 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:54 Download gff for
UFO10568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23080250..23080450 | 33..233 | 100 | -> | Plus |
arm_3R | 23080812..23081117 | 234..539 | 100 | -> | Plus |
arm_3R | 23081178..23081385 | 540..747 | 100 | -> | Plus |
arm_3R | 23081448..23081692 | 748..989 | 96 | -> | Plus |
arm_3R | 23081756..23081812 | 990..1041 | 91 | == | Plus |