Clone UFO10568 Report

Search the DGRC for UFO10568

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:105
Well:68
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptTfIIA-L-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10568.5prime Sequence

1140 bp (1031 high quality bases) assembled on 2012-01-06

> UFO10568.5prime
CAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGTACCATGCC
GTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTGGACGAGGG
CGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCGCAACAAGT
TGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCGATGGCTCC
CATCCGCCACCCATCGTGGCCAACAATCCAAAGGCAGCGAATGCCAAGGC
CAAGAAGGCCGCCGCCGCAACCGCGGTCACATCACACCAACATATCGGCG
GCAACAGCTCCATGTCCTCGCTGGTGGGGCTTAAGTCGTCCGCTGGAATG
GCCGCCGGCAGCGGCATAAGGAACGGGCTGGTGCCCATCAAGCAGGAAGT
CAACTCACAGAATCCACCGCCACTGCATCCTACCTCGGCTGCAAGCATGA
TGCAGAAACAGCAGCAGGCGGCGAGCAGTGGACAGGGTTCCATTCCAATT
GTGGCCACGCTGGACCCCAATCGCATTATGCCTGTTAACATCACGCTGCC
ATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCGAGTGCTCACCATACAAG
TGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGACCCAAATTCTGACGGCC
CACCTGATTTCATCCATCATGTCCTTGCCCACCACGTTGGCCTCGTCTGT
GCTTCAGCAGCACGTAAACGCAGCGCTAAGCAGCGCCAATCACCAGAAAA
CTCTTGCCGCCGCCAAGCAATTGGACGGTGCCCTGGGACTCCTCCGATGA
GGATGAAAGCGAGGAGAGCGACGACAACATCGACAACGATGACGACGATG
ACCTAGACAAGGACGATGACGAGGATGCGGAGCACGAGGATGCTGCCGAG
GAGGAGCCGCTCAACAGCGGAGACGATGTCACCGACGAGACTCTGCGAAA
TGTTGACACAGATAACGTTGATTGTTTTCAGTACGATAGATCACCAGTCG
CGAACAATGGAAATTTATCTCAAGATGGCATCATGAACATGGCGGGGCAG
GACTACTGTTCGAAATTCGAATGGGCGACGCAGAGTGGGCAGCTTTTCTA
AGACCATTCGTTTGGGGCGGCGGGGACCAAGGTAAGGTGT

UFO10568.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RB 1586 CG5930-RB 173..1261 9..1088 4980 98.1 Plus
TfIIA-L-RA 1595 CG5930-RA 173..1270 9..1088 4880 97.3 Plus
TfIIA-L-RC 1440 CG5930-RC 50..1115 32..1088 4865 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27255088..27255395 232..539 1540 100 Plus
3R 32079331 3R 27255456..27255663 540..747 1040 100 Plus
3R 32079331 3R 27254527..27254729 32..234 1015 100 Plus
3R 32079331 3R 27255726..27255968 748..988 915 95.5 Plus
Blast to na_te.dros performed 2014-11-27 20:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5734..5805 796..870 115 65.3 Plus

UFO10568.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:30 Download gff for UFO10568.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RB 164..1241 1..1066 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:54 Download gff for UFO10568.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RB 164..1241 1..1066 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:50 Download gff for UFO10568.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RB 164..1241 1..1066 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:50 Download gff for UFO10568.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27254528..27254728 33..233 100 -> Plus
3R 27255090..27255395 234..539 100 -> Plus
3R 27255456..27255663 540..747 100 -> Plus
3R 27255726..27255970 748..989 96 -> Plus
3R 27256034..27256090 990..1041 91 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:54 Download gff for UFO10568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23080250..23080450 33..233 100 -> Plus
arm_3R 23080812..23081117 234..539 100 -> Plus
arm_3R 23081178..23081385 540..747 100 -> Plus
arm_3R 23081448..23081692 748..989 96 -> Plus
arm_3R 23081756..23081812 990..1041 91 == Plus