UFO10570.5prime Sequence
1076 bp (1022 high quality bases) assembled on 2012-01-06
> UFO10570.5prime
CAGTCGACATGCAGCTAATTTATCGTGAACTCGAGGAGGACATACTTCGA
CGCACTAATGCAGTCTTTCCGGTACAAAATTGCTTTGTTGAGGTCCTCCC
CGATCAGTTTATCATTCCCAGAAAGTACGTGGAGCTGGGCGAATCGATTC
GATCGCTTCCCGTTTACCAGGACGACGTATGGATGGTGTCCTATCCACGA
ACCGGATCGACGTGGGCCCAGGAGATGGTCTGGCTGCTGGGTCACCAATT
GGATTACGTGGCCGCTGAGCAAGATTTAAGATTGCGATCTCCGCTCATTG
AACTATCCGCTTTGTTTAGCATCGATCATCACGAGACGGTGGCCCAAAAG
TTTGGCAATACCGTGGATCTGGTTCGCAATCTGCCACGCCCACGTTTTGC
ACGCTCCCACCTGCCGTGGCCTTTGCTACCCGAGCAATTTGAGACGGTAA
AGCCGAGGATCGTGTATACTGCTCGAAATCCCAAGGATCTTTGCGTCTCG
TACTATCACTACTTCAAGTTGCTGCACGGCATGAATGGGGACTTTGAGCA
ATTCGTGGATCTCTTCCTGGAGGGGCACACACCGATGGGATCCTATTGGC
GGCACGTCCTGCCCTTTTGGAAACGTAGCCAGGATGATAATGTGCTGTTC
ATCAAGTACGAGGACATGGTCAAGGATCTGCCCAGTGTAGTTCGCCGCTG
TGCCAGATTCCTGGGCGTTCAAAGTCTCCCTCGATGTGAGCACTTTGCAG
AAATTGTGCGATCACCTCACATTCGACAAGATGCGGGCGAACAAGCGGTG
AATCTGGAGAAGCTGCTCCGGAATCATCTTCAAGTTCATACGCAATGGCA
AGATCGGGATTGGCGCAATCACATGGGCATGAGATGTCGACGCTTTGATG
AATGGACCGAGAGACATATGCGTGGTTCTGGATTAAACTTTGACTACGTG
CCAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCCAGGTAGTGGCAAATC
ATAATCCATATCTAATCATAATCACAACTAGCTTAGGAGTCCCTGGGCCT
GAACTATGGCTTGGATTCCTCACCAT
UFO10570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St2-RB | 1528 | CG16733-RB | 28..976 | 8..950 | 4560 | 99.2 | Plus |
| St2-RA | 1137 | CG16733-RA | 28..976 | 8..950 | 4560 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9252350..9252962 | 344..950 | 2705 | 98.7 | Plus |
| 3R | 32079331 | 3R | 9251870..9252205 | 8..343 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:27:56 has no hits.
UFO10570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:50 Download gff for
UFO10570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16733-RA | 11..969 | 1..953 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:59 Download gff for
UFO10570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St2-RA | 21..976 | 1..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:31 Download gff for
UFO10570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St2-RA | 21..976 | 1..950 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:31 Download gff for
UFO10570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9251863..9252205 | 1..343 | 99 | -> | Plus |
| 3R | 9252350..9252962 | 344..950 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:59 Download gff for
UFO10570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5077585..5077927 | 1..343 | 99 | -> | Plus |
| arm_3R | 5078072..5078684 | 344..950 | 98 | | Plus |
