UFO10571.5prime Sequence
1038 bp (985 high quality bases) assembled on 2012-01-06
> UFO10571.5prime
CAGTCGACATGTGTAACGCCAATTGCTGTTCGAATCCCAAAGGCAAGGCT
GGCACCAAAACCGCCATCAATAATACAAATTGGCCAGATATCATACCAAC
TCCAGAAAGTCTGCTGTATCCCTATGAGGTCATCGAGGAGATCGCCGACT
TCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTGCGGC
TCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCTTCGA
GTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCATGCCG
GACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGATGCAG
GGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAATGCC
GGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACCAATG
CGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCTGATG
CATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCCAGGG
ACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAACTCGT
ACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCATGGGC
ATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTCCCAA
CTACGAGACCATCGCCGAGCTGAACGCCCTGCGCATGATGGGCGTGGATG
CGGTGGGCATGTCCACCGTACATGAGTCATCACTGCACGGCACTGCGACA
TGAAGGTATTCGCCTTCAGCCTCATCACAATAAGTGCGCCACCGAGTACA
GCGATAGAAGGACGATGAGGCAACCACGATGAGGTATGGCTGTGGCCAAG
AACAGCAAAGGCCTGCTGCGACTGGTCTCCCGCTCATCCGGGAAATCCAC
TGGCATCCGCTGCAGCTTTCTAGACCATTCGTTGGCGCGCGGCCCAGGTA
AGTGGTCTTATCTTATCCTTATTCATATCCTATTCCTC
UFO10571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-RE | 1449 | CG16758-RE | 319..1281 | 9..961 | 4550 | 98.9 | Plus |
| CG16758-RG | 1617 | CG16758-RG | 568..1449 | 90..961 | 4085 | 98.3 | Plus |
| CG16758-RF | 1245 | CG16758-RF | 196..1077 | 90..961 | 4085 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2499689..2500462 | 885..116 | 3655 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2502388..2502497 | 118..9 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:28:05 has no hits.
UFO10571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:51 Download gff for
UFO10571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1285 | 9..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:02 Download gff for
UFO10571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1285 | 9..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:34 Download gff for
UFO10571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1285 | 9..965 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:34 Download gff for
UFO10571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2499691..2500462 | 116..883 | 99 | <- | Minus |
| 3L | 2502391..2502497 | 9..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:02 Download gff for
UFO10571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2499691..2500462 | 116..883 | 99 | <- | Minus |
| arm_3L | 2502391..2502497 | 9..115 | 100 | | Minus |
