UFO10572.5prime Sequence
994 bp (990 high quality bases) assembled on 2012-01-06
> UFO10572.5prime
CAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCGGCCACCAG
CGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATGC
ACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGA
AGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTG
TTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGAT
TCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGC
CCAAGAACGAGCAGATCCGCAACATGTTGGATAAATTGGTGGTCATCAAG
CTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGT
GATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGCAGCAAA
TCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTACTGATG
AACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCAAGTACAA
AGGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTCCCGCGCA
TTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAG
GATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACGATACCTT
CCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATT
GTTTCTTGTCCAACATCGATAACCTGGGCGCCACCGTCGATCTGAACATC
CTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGT
CATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGGTGTACTCTCAT
TCAATGGAAAACAAGCTGCGCCTGTTGGAAATTGCTCAAGTGCCACCAGA
GCTGTGGGATGACTTAAGTCGGTTAAAACTTCAGTTCTTTAACC
UFO10572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RD | 2093 | CG4347-RD | 295..1284 | 9..993 | 4765 | 99.2 | Plus |
| UGP-RC | 2099 | CG4347-RC | 295..1290 | 9..993 | 4695 | 98.6 | Plus |
| UGP-RE | 2686 | CG4347-RE | 302..1264 | 36..993 | 4630 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352882..9353230 | 661..313 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 888..662 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354076 | 222..34 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 314..221 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 9352452..9352539 | 976..891 | 280 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:28:14 has no hits.
UFO10572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:51 Download gff for
UFO10572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RD | 284..1280 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:07 Download gff for
UFO10572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RD | 288..1284 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:36 Download gff for
UFO10572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RD | 288..1284 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:36 Download gff for
UFO10572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9352431..9352543 | 888..994 | 92 | <- | Minus |
| 3L | 9352602..9352827 | 662..887 | 100 | <- | Minus |
| 3L | 9352882..9353228 | 315..661 | 100 | <- | Minus |
| 3L | 9353738..9353829 | 223..314 | 100 | <- | Minus |
| 3L | 9353888..9354074 | 36..222 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:07 Download gff for
UFO10572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345531..9345643 | 888..994 | 92 | <- | Minus |
| arm_3L | 9345702..9345927 | 662..887 | 100 | <- | Minus |
| arm_3L | 9345982..9346328 | 315..661 | 100 | <- | Minus |
| arm_3L | 9346838..9346929 | 223..314 | 100 | <- | Minus |
| arm_3L | 9346988..9347174 | 36..222 | 100 | <- | Minus |
