UFO10574.5prime Sequence
1128 bp (1060 high quality bases) assembled on 2012-01-06
> UFO10574.5prime
CAGTCGACATGTACATGCAGCATGAGCGACATTCCGACAGCGACCCCAAC
TCCCGCCATCAACAAACCGAGGCATCCCACATGAGAGACCACTGGAAGCC
GTCAAAATCCCAACAGTCGCAACAATCTGATCGTGTAGACCCTCATGACA
AGCCATCGCAGACGGCGGTCTCCTTTCTGCAGAAACACCACACGCCTAAG
AACCCGGAATCGAAGGCTAATCCAGATGATGGGGCGTCCTGCTCATGCAC
CGCAAAGAGGTCCAAGTCCGCCGATCCACCAGCGGTTAAAGCTCACACCT
GTGCATGCAACACCGATCCAAGTCCATGTGGACTGGGTCATCAGGAGAAA
TCCAGTTCGAGGAAGCCCTGCTCCCAGAAAACATCGGTTACGGAACCAGA
GAAGGCTTCCTCATTCAAGAGTGCTATAACAGCGTGTACCAAGGAGCTCC
TCGATCCCTGCACTTGTGGCGCCCACCCACCATACTGGGCTGGTCAAAGC
AACTTGGTAACCGGACCATCCTACAGTAGAGCAATGGACCCCTCCTCAAG
CACTCTCGCTCCCTTGCATAGACCCGGAGCATCAAAAGGCAGCTTTGGTC
GATCCAAGAGTTTGGCCAGTCTGCCTAGTAAATCTAATCCGCCAACTCAG
AGTGGCGTCACTTGGTTGTCGGCTTTAAAGGATCCGGAGAGTACATGTTG
CTCTTCCAAAGAGGACGAACGTCCTGCATGTACCTGCAACGCTACCCAGA
CTAATCAGGATCCTTCTATGAGTTCACTTCCTCAGAGCCATCCCAATTAT
CGCAGTATGACATCCAAATCAAGTAATTTCAGGCGCCAAACCCGCGCAAT
CAACCCTCCTTTGGGCCAGGCGATGAGACCTCAGCAACCACACGATCCCA
ATCGATTGTGGGTCAGGTCACCTGCCTATGCGCATCGGAGCATCAACCCA
CCAAGGCCTTTGTGTCGAGCCTGCCGATCGGGAATGCCCAAATGAAATCA
GATGCGCCATGCCCCTCCACAAGAATACACCATCCATCCGGGTTGCCCAG
TCACGATTGTCAGACTCTCAAGGCGAACCAGTACCCTCTTCCGTCTAGGA
AAGGTGAAGCGTTACGGTCAGGAAGAAA
UFO10574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pif1A-RA | 6324 | CG42599-RA | 2872..3999 | 9..1127 | 5220 | 98.3 | Plus |
| Pif1A-RH | 7694 | CG42599-RH | 4242..5369 | 9..1127 | 5220 | 98.3 | Plus |
| Pif1A-RG | 7761 | CG42599-RG | 4309..5436 | 9..1127 | 5220 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8776888..8777927 | 1044..9 | 4985 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:36:46 has no hits.
UFO10574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:34 Download gff for
UFO10574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1B-RB | 696..1809 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:17 Download gff for
UFO10574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1A-RG | 4309..5422 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:10 Download gff for
UFO10574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1A-RG | 4309..5422 | 9..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:10 Download gff for
UFO10574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8776814..8777927 | 9..1114 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:17 Download gff for
UFO10574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4602536..4603649 | 9..1114 | 98 | | Minus |
