UFO10576.5prime Sequence
1129 bp (1043 high quality bases) assembled on 2012-01-06
> UFO10576.5prime
CAGTCGACATGAGCGATGCCTCCCTGGAACTTCCCTCTGAACTATTGAAC
AAATCTCTAGTGACGGTCACCAATATCTCAAAGTCGTTGTCTCGCCTGAT
TTTGAACTCCGCTCGCCGCTACTCCCGCTTCGTGCTCTTCTTTAAGCCAG
TTTTCGGAGATGCCCTGGTGGTCAAGGGATCTGAAGATCCCACTACAACC
ACCACAGTACGCACCACCACAACCACCGAAGAGACTGACAAGCTCAACGA
AGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAA
TAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAG
AAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTC
AGTTTGCTCATGGAAAACGGTGTAACAAGGGTGACACTATCCCATATCAC
CAGCTCACCGTCTTTCATTGCATACGAAATTCCGGATGAGCATTCATCAG
CGGGCAGATGTGAATAAAGGCCGGATAAACTTGGGCTTTTTTTCTTTACG
GTCTTTAAAAGGCCGTAATATCAGCTGACGTCTGGTTATAGGTACATGAG
CACTGACTGAAATGCTCAATGTTCTTACGATGCAATGGGATATATCCACG
GGGATATCAGTGATTTTTTTTCATTAGCT
UFO10576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43386-RB | 716 | CG43386-RB | 371..617 | 8..254 | 1220 | 99.6 | Plus |
| CG1889-RA | 1468 | CG1889-RA | 1223..1373 | 254..104 | 740 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9966714..9966864 | 254..104 | 740 | 99.3 | Minus |
| X | 23542271 | X | 9967024..9967120 | 104..8 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:36:54 has no hits.
UFO10576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:35 Download gff for
UFO10576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15250-RA | 1..249 | 9..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:21 Download gff for
UFO10576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43386-RB | 371..620 | 8..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:13 Download gff for
UFO10576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43386-RB | 371..620 | 8..258 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:13 Download gff for
UFO10576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9966714..9966863 | 105..254 | 99 | <- | Minus |
| X | 9967024..9967120 | 8..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:21 Download gff for
UFO10576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9860747..9860896 | 105..254 | 99 | <- | Minus |
| arm_X | 9861057..9861153 | 8..104 | 100 | | Minus |
