UFO10577.5prime Sequence
1125 bp (1026 high quality bases) assembled on 2012-01-06
> UFO10577.5prime
CAGTCGACATGAGATCGTTTTGTGTGTCTGTCTTATTAGTTACCCTTTTG
GGGATTGCGATGGCATATAGAGATTATTCGGAGAAGTGCTATCAATCCCC
TCGGTCTTATGGACCTTGTAATGTTAAGGCCCATGGATACACTTATGATT
CTCGTAGAAATGTATGTCGTCGAATTGTTCTTCGGTGTATGGCAAGGGGT
AACTATTTCTTTGACAAAGATTCCTGCGAATACACATGCTTAAAGCATAT
TCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAA
TAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAG
AAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTTCA
GTTTGCTCATGGAAAACGTGTAACAAGGGTGAACACTATCCCATATCACC
AGCTCACGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGC
GGCAGATGTGAATAAAGCGATAAACCTTGTGCTATTTTCTTACGTCTTTA
AAAGCGTAATATCAGCTGACGTCTGGTATAGTAATTGGCACTGACTGATG
CCTCAATGTTCTTACATGGCATGGATTATCACCGTGATATCAGTGAATTT
TTTTTCCCATTTAGCCTTCTCTTAG
UFO10577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42467-RA | 361 | CG42467-RA | 18..263 | 9..254 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3701423..3701601 | 76..254 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 3701307..3701373 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:37:03 has no hits.
UFO10577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:36 Download gff for
UFO10577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42467-RA | 1..249 | 9..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:24 Download gff for
UFO10577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42467-RA | 10..263 | 1..254 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:17 Download gff for
UFO10577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42467-RA | 10..263 | 1..254 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:17 Download gff for
UFO10577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3701299..3701373 | 1..75 | 94 | -> | Plus |
| 2L | 3701423..3701601 | 76..254 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:24 Download gff for
UFO10577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3701299..3701373 | 1..75 | 94 | -> | Plus |
| arm_2L | 3701423..3701601 | 76..254 | 100 | == | Plus |
