UFO10580.5prime Sequence
1129 bp (1033 high quality bases) assembled on 2012-01-06
> UFO10580.5prime
CAGTCGACATGAGCCTGATTTGCCGTCGATTTGGCTCTTCCTTGAGGCCC
ATCGCCCGCACACTCCACCCACTGCTCGCCAGCAAAATCATCGAAGCACA
AAGGTCACCGCTGAAAAACAAGCGATTTTACGCCGGCAAGAGAATGGATT
TAAAGTATCTAAATCAAAAGGAGGCCATCGCCGTGGACCAGGAACTATTC
AACGATTACAAGTTCAGTGTGGATCAGCTAATGGAGCTGGCGGGCTTGAG
CTGCGCCCATGCTGTGGCCAAATGCTTCCCGGCAGAGAAGCATCCACGAA
TTCTCGTTTGCTGTGGACCAGGAAACAATGGAGGCGACGGCTTGGTTGCC
GCCCGCCACCTCGCCCTCATGGGCTACACACCCACCATCTACTATCCCAA
GCCGACGGCCAAGCCGCTCTTCGAGAACCTCAGCCACCAGTGCCAACAGA
TGGACATCTGCGACGTGAAGGAGTGTCCGTCGGTGGAGAGTGCCGCCCGT
GACTATGATCTCATTCTGGATGCGCTCTTCGGATTCAGCTTCAAGCCGCC
GGTGCGAGCGGACTTTGTCGCCGTCGTGGAACTAATGCAGCAGACCAAAC
TGCCAATTGCCAGCGTGGACATTCCCAGCGGCTGGGATGTGGAGAAGGGC
AAGCTGACTGAATGCGACGTGGAGCCGGCTCTGCTCATTTCCCTCACTGC
GCCGAAACTCTGTGCCCGCCAATTTCGCGGCGAACATCACTACTTGGGCG
GCAGATTCGTGCCGCCCGCCCTGCAGCGCAAATACGAACTGAATCTGCCC
GTTTATCCGGGCAACGAGCTGTGCGTCAAGCTGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAACCGCCCCGGCGGCAACGAGCGTTCTGACCAATT
CAGATGGAGTCCTGAGGTCATTACTGGATCTATCACAGGATTCAAGCAGC
TCGATTCAATTTCCCCCCCGCTCTGCCACTCATCGAATATGGTGTATTCT
ATAGCACTCTCGGCCAACAGGGAACCCAT
UFO10580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2974-RB | 1200 | CG2974-RB | 107..931 | 9..833 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10085461..10086065 | 613..9 | 3025 | 100 | Minus |
| X | 23542271 | X | 10085183..10085405 | 833..611 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:37:12 has no hits.
UFO10580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:36 Download gff for
UFO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2974-RB | 104..931 | 4..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:27 Download gff for
UFO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2974-RB | 104..931 | 4..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:21 Download gff for
UFO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2974-RB | 104..931 | 4..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:21 Download gff for
UFO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10085183..10085402 | 614..833 | 100 | <- | Minus |
| X | 10085461..10086068 | 4..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:27 Download gff for
UFO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9979216..9979435 | 614..833 | 100 | <- | Minus |
| arm_X | 9979494..9980101 | 4..613 | 99 | | Minus |
