UFO10581.5prime Sequence
927 bp (927 high quality bases) assembled on 2012-01-06
> UFO10581.5prime
CAGTCGACATGTCATGGAGATATGCGTCGCCCAGCCGCTTGGAGACCTCC
GAACAGACCACAGGCCGCCAGCTGCAGCGAGTCCTGCACTACTCGATGGC
TCCTAGCCGGGCTCTTCCAGGACTAAGACGCGCCGAGTGCGCCATCCATG
ACGTTGACTGTGATGAGGTCTATCCGGGCATCTACATTGGTGATGCTGCG
GCGGCCAAAAACAAAACGTATCTGAGATTGATGGGCATCACCCACGTTCT
GAACGCGGCCGAGGGATGTCGGTATGGTCAGGTGGACACTGGACACAGCT
ACTACCGGGATATGCCCAGCATCAGGTACATGGGCTTCCCCATGGTCGAT
GCCCCAACGACAGACATCTCGCGCTACTTCTACGTGGCCTCCAAGTTCAT
CGACAGCGCCATCAGCAGCGGCGGCAAGATCCTGGTCCACTGCCTGGTGG
GCATGTCGCGATCGGCCACCTGTGTGCTGGCCTACCTGATGATCTGCCGG
AAGATGTCGGCGGTGGACGCGATACGCACGGTGCGGATGAGGCGCGATAT
CCGGCCGAATGATGGATTCCTGCAGCAACTGGCCGACTTGGACATGGAGC
TCAAGCGCAAGAACCTGTATCCCTACGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCAT
UFO10581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7378-RA | 1189 | CG7378-RA | 371..988 | 9..626 | 3090 | 100 | Plus |
| CG7378-RB | 2020 | CG7378-RB | 448..1048 | 26..626 | 3005 | 100 | Plus |
| CG7378-RC | 3832 | CG7378-RC | 773..1075 | 324..626 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18908883..18909086 | 423..626 | 1020 | 100 | Plus |
| X | 23542271 | X | 18907498..18907668 | 26..196 | 855 | 100 | Plus |
| X | 23542271 | X | 18907731..18907861 | 197..327 | 655 | 100 | Plus |
| X | 23542271 | X | 18908275..18908379 | 324..428 | 510 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:37:20 has no hits.
UFO10581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:37 Download gff for
UFO10581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7378-RA | 371..988 | 9..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:32 Download gff for
UFO10581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7378-RA | 371..988 | 9..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:24 Download gff for
UFO10581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7378-RA | 371..988 | 9..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:24 Download gff for
UFO10581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18908277..18908374 | 326..423 | 100 | -> | Plus |
| X | 18908884..18909086 | 424..626 | 100 | | Plus |
| X | 18900943..18900960 | 9..26 | 100 | -> | Plus |
| X | 18907499..18907668 | 27..196 | 100 | -> | Plus |
| X | 18907731..18907859 | 197..325 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:32 Download gff for
UFO10581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18802917..18803119 | 424..626 | 100 | | Plus |
| arm_X | 18794976..18794993 | 9..26 | 100 | -> | Plus |
| arm_X | 18801532..18801701 | 27..196 | 100 | -> | Plus |
| arm_X | 18801764..18801892 | 197..325 | 100 | -> | Plus |
| arm_X | 18802310..18802407 | 326..423 | 100 | -> | Plus |
