UFO10582.5prime Sequence
1080 bp (1056 high quality bases) assembled on 2012-01-06
> UFO10582.5prime
CAGTCGACATGACCATAAGGATTGCGAGGCGAAATATGTTTTTCATACAC
GCCCCCGAGGAGGAGAAGTGCATGGAGGCGCAGCTGGACATCCTTATGAA
GATCAACTCCGGTGAATATCGGCTGGTGAAGAAGAACAAGCGCAGTTCCG
TTTGGAACGTCTACCGGGAAATCGCTCGTCCGGACGGCACCAAGTTGAAA
TGGCGATACTTCTGCATGGGCTGCAAGCGTGTGATGCAGAGCACCGGCGG
CACCACCTCCAATCTGCGCATCCACAAGTGCCACGTACGGTATATCAAGC
AGAACGGCCATCTCACCGACGGCAGTCACTCCTACGACCATGATCCCGCG
CCACCAGCTAGCCAACCGTCGCCGCGCGTCCAGAAACCGAAGACCAGGCG
GCCGACATCCTATTCTACGCAGTGTGAGCAGTTCTATGAGGTCACCATGG
ATCCGGAGACCCAGTACAGCGATCTGGATGATGAGATTGAGGCTTCTTTG
GAGGAGGAGCAGACTCTGAAATCAAAACGTGAATTGGAATCCTCCCACTC
CAGACCCCTGCTGAAGCTCTTCTCCGAGGAGAACTTGTCGACTGAACCAG
AGGAGCCGGAAGACGAGATTGAGATTGTGGAGGCGGAAGATCAGGTGCCC
ATCGAGCTGGACCTATGTGACATCCAACATACTACATCCGATGCTGGCGG
TGAGGCATCGAACCCAAGCCAACGGAAAGTGTCGCCCAGTTCGATGCCAA
TGCCATTTCCGAAGCGGAATCCTATGCCAAAGCCTGGGCTCACGCCTTCC
TGCGGCTGAACGAGGACCAAAAGTTCTACGCCAAGCGCTCCATAGATGAA
CTACTGGTCTTGGGTCGTCTGGAGCGACTGAGCATTTCCACGGTCACATC
CTTGACCACAAACCTGGCAAGCTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTATATCATAATCATAATCATAATCATATCACCACTAGC
CTAGAAATCCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAAACGC
CCGGCGGCCACCCGAGCGTTCTGAACAAAT
UFO10582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11560-RA | 1101 | CG11560-RA | 64..972 | 9..916 | 4520 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12120082..12120588 | 9..515 | 2535 | 100 | Plus |
| 3L | 28110227 | 3L | 12120655..12121056 | 516..916 | 1960 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:12 has no hits.
UFO10582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:32 Download gff for
UFO10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11560-RA | 20..932 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:00 Download gff for
UFO10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11560-RA | 64..976 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:57 Download gff for
UFO10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11560-RA | 64..976 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:57 Download gff for
UFO10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12120082..12120588 | 9..515 | 100 | -> | Plus |
| 3L | 12120655..12121060 | 516..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:00 Download gff for
UFO10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12113182..12113688 | 9..515 | 100 | -> | Plus |
| arm_3L | 12113755..12114160 | 516..922 | 99 | | Plus |
