UFO10583.5prime Sequence
1028 bp (1004 high quality bases) assembled on 2012-01-06
> UFO10583.5prime
CAGTCGACATGGCGATCCTGCTCGGTTTGGTGGTCGGTGTCCTTACGCTC
GTCGCTTGGTGGGTGCTCCAGAACTACACCTACTGGAAACGGCGAGGAAT
TCCCCATGATCCACCCAATATTCCGCTCGGCAATACCGGCGAACTTTGGA
GAACAATGCCGCTGGCCGGCATCCTCAAGCGAACATATCTGAAATTCAGG
AAACAGACCGACGGACCTTTTGCGGGCTTCTACCTCTATGCTATGAAGTA
CATTGTCATCACGGACGTGGATTTTGTAAAAACCGTGCTAATTCGCGACT
TCGATAAGTTTCACGATCGCGGAGTGTATCACAACGAAAAGGATGATCCG
CTGACCAATAACCTGGCAACCATCGAGGGTCAAAAGTGGAAAAATCTGCG
ACAGAAGCTGACCCACACATTTACGTCAGCCAAAATGAAGAGCATGTTTT
CCACGGTCTTAAACGTGGGCGATGAGATGATTCGCGTGGTCGATGAAAAG
ATCTCCAGTTCTTCGCAGACCCTGGAAGTCACCGACATTGTGTCACGCTT
CACATCCGACGTAATTGGAATCTGTGCTTTTGGCCTGAAATGCAATAGTC
TGCGGGATCCTAAGGCGGAGTTCGTCCAAATGGGCTACTCAGCGCTAAGA
GAACGTCGTCATGGTTGGCTGGTAGATCTACTAATCTTCGGGATGCCTAA
ACTGGCCGTGAAACTGGGTTTCCAGTTCTTGCTTCCCTCGGTGCAGAAGT
TCTATATGAAAATCGTGCAGACACCATAGATTACAGGATGAAGAGAAAGG
TGACTCGGAACGATTTCATGGACACGTTGATTGACATGAAACAGCAGTAT
GATAAGGCGACAAGGAAAATGGACTTGCCTTCAATGATGTCGCTGCCCAG
GCCTTCGTATTTTCCTAGCTGGTTTTGAGGCGGATCCAAACCATGGGATT
CCCACTTTATGAGCTGGCTGCAATCAGATGTTCAGGACAGTTGAGGGCTG
AAATCGACAGGTGTGCTGGAAAGGTACA
UFO10583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a19-RB | 1903 | CG10243-RB | 15..1041 | 9..1028 | 4885 | 98.9 | Plus |
| Cyp6a19-RA | 1694 | CG10243-RA | 15..1041 | 9..1028 | 4885 | 98.9 | Plus |
| Cyp6a20-RB | 1801 | CG10245-RB | 287..480 | 282..475 | 310 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14877800..14878826 | 9..1028 | 4660 | 98.9 | Plus |
| 2R | 25286936 | 2R | 14882404..14882597 | 282..475 | 310 | 77.3 | Plus |
| 2R | 25286936 | 2R | 14882933..14883035 | 810..911 | 195 | 81.6 | Plus |
| 2R | 25286936 | 2R | 14874336..14874414 | 371..449 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:20 has no hits.
UFO10583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:32 Download gff for
UFO10583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a19-RA | 4..1038 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:05 Download gff for
UFO10583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a19-RA | 6..1040 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:59 Download gff for
UFO10583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a19-RA | 6..1040 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:59 Download gff for
UFO10583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14877791..14878825 | 1..1027 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:05 Download gff for
UFO10583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10765296..10766330 | 1..1027 | 98 | | Plus |
