UFO10585.5prime Sequence
1060 bp (983 high quality bases) assembled on 2012-01-06
> UFO10585.5prime
CAGTCGACATGAGAACGGAGGCAGCGGTCAGTTGTTTCCTGTTGGTATTG
CACAGGGTATGCTGTCAGAGCGGCAACGATGAGTCCTGGCTGAGTCCGGA
TCCCGCCTGGTCGGACCTGGTTAACGATATCAATCAGCCCGGTGAATTGT
GCCAGTGTCCTACGTGTCCAGATGTGTCTCCAGTGGCCATGGAGGATGCC
GTGGCACTCACATACTTCAAGAAGTTCGTCAATCTGCTGTTCCAGCGCAA
GCGTTTTCAGTACGATGTTATGTCGGCGGTCCATAAGCGATCGCTGCTCT
TCTCCCTGATCCCATCGCAACTGGATGAACTGGAGAGGGTGCAGGATGCT
CGGGATTTGGACGTTTTGCTGACTAAGATATTGGAGAGTGCCGAGGAGGC
TCCTTTGTTTAATGGAAGATCCGGATGCTCATACGTCCGACACGGCTTTT
TCTCCTTATTGGTGGATATTTTCAAGGATGTAATTGAACTGACGCAAACG
ACCGAGGTGAAATTTATCCTATATGCAACATTAGCAATTGCACTTGTCGT
CATTGTGCACAAACGTTTCCGTGTCGGACTAATTTCAATTGTACTAGGAG
GCGTGTTTCTGTGCGGATATATTTCAGACTTATTTAGAATGCAACAGAGA
ATTAGACATCGATAGGATGATAGAGGTCGTAAATCATCACCATGAGCCTG
AATCGTCCTGGTTTGGTCGACTGTTAGCTACATATACCAAGCCTCACCAA
AAACTAAGAAGATAGAAATGATCAAAAATCCGCAAAAATCAGCATTTCCA
TTTGCATGCCAGATCAAGTGTTCTTTATGTACATGAATAACATATTTATC
CAGCAGTTGGAAATCATGATAGAAAGGTGTCGGGTAACTAATGACTAAAC
TGTCCTCGGGATTATCCTTCCGTATAACTCCTTGCACCAGTCCTTTTGGT
GTTTTTAGTGGTTACACCATAAAGCTGGTGCCTTTAAATACATTTTAAGG
CCCCGAAGCATGGGCGTTAACTTTTACCACAAGCCAGCGCCCAAGGGCAA
CCCCCCGAAT
UFO10585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12945-RB | 2059 | CG12945-RB | 132..1169 | 9..1047 | 4795 | 98.2 | Plus |
| CG12945-RC | 2032 | CG12945-RC | 382..1142 | 286..1047 | 3410 | 97.5 | Plus |
| CG12945-RC | 2032 | CG12945-RC | 132..383 | 9..260 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9790839..9791090 | 260..9 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 9790524..9790773 | 508..259 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 9790319..9790462 | 649..505 | 675 | 99.3 | Minus |
| 3R | 32079331 | 3R | 9790138..9790265 | 775..649 | 590 | 99.2 | Minus |
| 3R | 32079331 | 3R | 9789954..9790084 | 906..775 | 505 | 93.9 | Minus |
| 3R | 32079331 | 3R | 9789749..9789879 | 1041..909 | 255 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:37:45 has no hits.
UFO10585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:39 Download gff for
UFO10585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 121..1170 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:44 Download gff for
UFO10585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 125..1174 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:35 Download gff for
UFO10585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 125..1174 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:35 Download gff for
UFO10585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9789954..9790084 | 776..906 | 96 | <- | Minus |
| 3R | 9790138..9790265 | 649..775 | 99 | <- | Minus |
| 3R | 9790320..9790460 | 507..648 | 99 | <- | Minus |
| 3R | 9790526..9790771 | 261..506 | 100 | <- | Minus |
| 3R | 9790839..9791097 | 1..260 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:44 Download gff for
UFO10585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5616042..5616182 | 507..648 | 99 | <- | Minus |
| arm_3R | 5616248..5616493 | 261..506 | 100 | <- | Minus |
| arm_3R | 5616561..5616819 | 1..260 | 98 | | Minus |
| arm_3R | 5615676..5615806 | 776..906 | 96 | <- | Minus |
| arm_3R | 5615860..5615987 | 649..775 | 99 | <- | Minus |
