UFO10586.5prime Sequence
1080 bp (1063 high quality bases) assembled on 2012-01-06
> UFO10586.5prime
CAGTCGACATGATTAGCACCACGGATTATCCAACAGTGGAGACCACCACA
ACTGCCGAAGAGCTCTATGCGGAGTACATATCCGCGCCGGCCAGCAGCAT
GAGTCCCGCTGCAATTGCCGAGCACCTGCAGCAGAATCAGATCACCTTCG
AGATACCCAGTGCCCACGATCTGCGACACATCGACGCCCTCAACTCCTTC
AACGCCCTGCTCCAGAGGATTGGCAACGCAGCGGTGTCCTACGATCCCGC
TCCACCCAGCGGCTGGTCTCCGGATGGCAGCATCAGCACCGAGCAGCTCT
CCAAGTCGGTGGTTCTGGATCTGGCCGACTTGCGGGATAGGTCCGAGGAA
TCGGGCGAATCCTCGTGGTGGAGCCAGATCTTCGGGGATGCCGACATGCA
TGTGATCATCAATTATCTGTGGATCGGAGTGGTCAGCTCGCTGGTCATTC
TGTCGCTGGTCTTCATCCTCTTCAGCTGCTACTTCTACAGGAAGTTCCGC
ACTTGGAAAAAATGCAATAAGGACATACGTGCCCAGATCCATGCGGCCAG
TGACTCGTACTCCTCGCACCTGGTTGGTTGCGATGCCAGCAGACTGCTGT
TGCACCAGCAGATGCAGCATCCACATCATCGGAGCAGCGAGGCTGGGTTC
TACCAAATCGAATCGCCGCCCTGCTACACAATCGCCACCGGATTGCCCAG
CTACGATGAGGCACTGCATCATCAGCCTCGGCACTTTGCCTACGGCATGA
AGTTCGTTTATCCCTCGTTGGCGGCCGTGCATCATCATCACCATTGCATT
TCCAATTGGGAGAAGCAGAGCCGCTGAATAAGCTGCAAAGTGCAAGCTGT
CAGCGGCAGCGGCAGTGGAGGAGGAAAAGCCGACTCCTCATCGTCCACGT
CTGCATCCGCGTCGCCATCCTCTTCGGATCCAGCAACTTGGCCACAGCAA
CGCCTGCATTTGCATTAACATGCCAAGTGGGGGCAGGATGAGGAGGTGGA
TATTAGATTCCGATTCGGCAATTGCAGTTGCAGTGGCAGTAGCACAAAAG
TTTACAGGCGGCGGGCGCCTGCGGACGATG
UFO10586.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm-RB | 2495 | CG17943-RB | 226..1304 | 8..1080 | 5110 | 98.8 | Plus |
| comm-RA | 1678 | CG17943-RA | 226..1304 | 8..1080 | 5110 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15727692..15728205 | 521..8 | 2555 | 99.8 | Minus |
| 3L | 28110227 | 3L | 15722702..15723271 | 1080..517 | 2335 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:37:53 has no hits.
UFO10586.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:40 Download gff for
UFO10586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 343..1428 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:49 Download gff for
UFO10586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 219..1304 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:38 Download gff for
UFO10586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 219..1304 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:38 Download gff for
UFO10586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15722702..15723271 | 517..1080 | 97 | <- | Minus |
| 3L | 15727697..15728212 | 1..516 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:49 Download gff for
UFO10586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15715802..15716371 | 517..1080 | 97 | <- | Minus |
| arm_3L | 15720797..15721312 | 1..516 | 99 | | Minus |
